Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GKC27_RS17300 Genome accession   NZ_CP046130
Coordinates   3322461..3323150 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain DSM 27     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3317461..3328150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS17265 (GKC27_17075) - 3317539..3318021 (-) 483 WP_003213076.1 flagellar protein FlgN -
  GKC27_RS17270 (GKC27_17080) flgM 3318040..3318303 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKC27_RS17275 (GKC27_17085) - 3318383..3318802 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  GKC27_RS17280 (GKC27_17090) comFC 3318859..3319545 (-) 687 WP_003212791.1 ComF family protein Machinery gene
  GKC27_RS17285 (GKC27_17095) - 3319542..3319835 (-) 294 WP_003213271.1 competence protein ComFB -
  GKC27_RS17290 (GKC27_17100) comFA 3319902..3321281 (-) 1380 WP_269457875.1 DEAD/DEAH box helicase Machinery gene
  GKC27_RS17295 (GKC27_17105) - 3321401..3322243 (-) 843 WP_003213402.1 DegV family protein -
  GKC27_RS17300 (GKC27_17110) degU 3322461..3323150 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GKC27_RS17305 (GKC27_17115) degS 3323215..3324390 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  GKC27_RS17310 (GKC27_17120) - 3324612..3325280 (+) 669 WP_003212936.1 YigZ family protein -
  GKC27_RS17315 (GKC27_17125) - 3325265..3326341 (+) 1077 WP_003213564.1 LCP family protein -
  GKC27_RS17320 (GKC27_17130) - 3326377..3327444 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=401466 GKC27_RS17300 WP_008348273.1 3322461..3323150(-) (degU) [Bacillus pumilus strain DSM 27]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=401466 GKC27_RS17300 WP_008348273.1 3322461..3323150(-) (degU) [Bacillus pumilus strain DSM 27]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment