Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GJV39_RS06430 | Genome accession | NZ_CP046114 |
| Coordinates | 1228871..1229389 (-) | Length | 172 a.a. |
| NCBI ID | WP_012621700.1 | Uniprot ID | B8F401 |
| Organism | Glaesserella parasuis strain SCW0912 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1223871..1234389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV39_RS06400 (GJV39_06400) | argF | 1224055..1225065 (-) | 1011 | WP_021109500.1 | ornithine carbamoyltransferase | - |
| GJV39_RS06405 (GJV39_06405) | - | 1225214..1225492 (+) | 279 | WP_010786777.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GJV39_RS06410 (GJV39_06410) | - | 1225503..1225775 (+) | 273 | WP_005712616.1 | HigA family addiction module antitoxin | - |
| GJV39_RS06415 (GJV39_06415) | rhlB | 1225839..1227059 (+) | 1221 | WP_005712618.1 | ATP-dependent RNA helicase RhlB | - |
| GJV39_RS06420 (GJV39_06420) | - | 1227069..1227377 (+) | 309 | Protein_1260 | helicase HerA-like domain-containing protein | - |
| GJV39_RS06425 (GJV39_06425) | - | 1227449..1228663 (-) | 1215 | WP_021109499.1 | ATP-binding protein | - |
| GJV39_RS06430 (GJV39_06430) | ssb | 1228871..1229389 (-) | 519 | WP_012621700.1 | single-stranded DNA-binding protein | Machinery gene |
| GJV39_RS06435 (GJV39_06435) | uvrA | 1229692..1232520 (+) | 2829 | WP_021109498.1 | excinuclease ABC subunit UvrA | - |
| GJV39_RS06440 (GJV39_06440) | - | 1232604..1232984 (+) | 381 | WP_021109497.1 | YacL family protein | - |
| GJV39_RS06445 (GJV39_06445) | - | 1232950..1233201 (+) | 252 | WP_021109496.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19296.11 Da Isoelectric Point: 4.8074
>NTDB_id=401136 GJV39_RS06430 WP_012621700.1 1228871..1229389(-) (ssb) [Glaesserella parasuis strain SCW0912]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTQTNYNQDGYTDSYAQNNNFNGGNATRPQPAQKPAAQAE
PPMDNFDDDIPF
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTQTNYNQDGYTDSYAQNNNFNGGNATRPQPAQKPAAQAE
PPMDNFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=401136 GJV39_RS06430 WP_012621700.1 1228871..1229389(-) (ssb) [Glaesserella parasuis strain SCW0912]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGCCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACAAACCAACTACAATCAAGACGGCTACACCGACA
GCTATGCTCAAAATAACAACTTCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGCCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACAAACCAACTACAATCAAGACGGCTACACCGACA
GCTATGCTCAAAATAACAACTTCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
92.222 |
100 |
0.965 |
| ssb | Vibrio cholerae strain A1552 |
53.039 |
100 |
0.558 |
| ssb | Neisseria meningitidis MC58 |
41.954 |
100 |
0.424 |
| ssb | Neisseria gonorrhoeae MS11 |
41.954 |
100 |
0.424 |