Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJR68_RS04180 Genome accession   NZ_CP046049
Coordinates   880258..880782 (-) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain DY.F1.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 875258..885782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJR68_RS04160 (GJR68_04180) plsB 875470..877953 (-) 2484 WP_012368492.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  GJR68_RS04165 (GJR68_04185) - 878084..878455 (+) 372 WP_004245908.1 diacylglycerol kinase -
  GJR68_RS04170 (GJR68_04190) lexA 878583..879194 (+) 612 WP_004245906.1 transcriptional repressor LexA -
  GJR68_RS04175 (GJR68_04195) zur 879387..879917 (-) 531 WP_049257468.1 zinc uptake transcriptional repressor Zur -
  GJR68_RS04180 (GJR68_04200) ssb 880258..880782 (-) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GJR68_RS04185 (GJR68_04205) uvrA 881035..883869 (+) 2835 WP_036919181.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=400701 GJR68_RS04180 WP_004249162.1 880258..880782(-) (ssb) [Proteus mirabilis strain DY.F1.2]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=400701 GJR68_RS04180 WP_004249162.1 880258..880782(-) (ssb) [Proteus mirabilis strain DY.F1.2]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGCGCACCATCTCGCCCAGCACAACAACCAGCGGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment