Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SPNINV200_RS07970 Genome accession   NC_017593
Coordinates   1521311..1521907 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae INV200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1516311..1526907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS07950 (SPNINV200_14910) - 1517242..1517946 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  SPNINV200_RS07955 (SPNINV200_14920) - 1518037..1518648 (-) 612 WP_000804592.1 NUDIX hydrolase N-terminal domain-containing protein -
  SPNINV200_RS07960 (SPNINV200_14930) - 1518635..1520008 (-) 1374 WP_000778714.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SPNINV200_RS07965 (SPNINV200_14940) - 1520092..1521135 (-) 1044 WP_000814633.1 D-alanine--D-alanine ligase -
  SPNINV200_RS07970 (SPNINV200_14950) recR 1521311..1521907 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  SPNINV200_RS07975 (SPNINV200_14960) pbp2b 1521918..1523975 (-) 2058 WP_078145245.1 penicillin-binding protein 2B -
  SPNINV200_RS07980 (SPNINV200_14970) - 1524175..1525026 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  SPNINV200_RS07985 (SPNINV200_14980) - 1525042..1525926 (-) 885 WP_000222983.1 ROK family protein -
  SPNINV200_RS07990 (SPNINV200_14990) - 1525944..1526861 (-) 918 WP_001281524.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=40068 SPNINV200_RS07970 WP_000966743.1 1521311..1521907(-) (recR) [Streptococcus pneumoniae INV200]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=40068 SPNINV200_RS07970 WP_000966743.1 1521311..1521907(-) (recR) [Streptococcus pneumoniae INV200]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment