Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJD93_RS13855 Genome accession   NZ_CP046045
Coordinates   2650794..2651369 (-) Length   191 a.a.
NCBI ID   WP_096902231.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2645794..2656369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS13835 (GJD93_13825) - 2646040..2646870 (-) 831 WP_154321174.1 SAM-dependent methyltransferase -
  GJD93_RS13840 (GJD93_13830) - 2647168..2648475 (-) 1308 WP_004970183.1 FAD-dependent oxidoreductase -
  GJD93_RS13845 (GJD93_13835) - 2648899..2649783 (-) 885 WP_154321175.1 pirin family protein -
  GJD93_RS13850 (GJD93_13840) ahpC 2649980..2650543 (-) 564 WP_004970191.1 alkyl hydroperoxide reductase subunit C -
  GJD93_RS13855 (GJD93_13845) ssb 2650794..2651369 (-) 576 WP_096902231.1 single-stranded DNA-binding protein Machinery gene
  GJD93_RS13860 (GJD93_13850) - 2651421..2652785 (-) 1365 WP_104852874.1 MFS transporter -
  GJD93_RS13865 (GJD93_13855) - 2653001..2654086 (-) 1086 WP_004970195.1 DUF475 domain-containing protein -
  GJD93_RS13870 (GJD93_13860) tenA 2654391..2655065 (+) 675 WP_136144258.1 thiaminase II -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21036.83 Da        Isoelectric Point: 6.4800

>NTDB_id=400660 GJD93_RS13855 WP_096902231.1 2650794..2651369(-) (ssb) [Acinetobacter towneri strain 19110F47]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSANRGQSDQQDGGFAQPRFNNNQGGYGNQNQAPATGYANQNQGGFNQNQGG
GYANNNPSGFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=400660 GJD93_RS13855 WP_096902231.1 2650794..2651369(-) (ssb) [Acinetobacter towneri strain 19110F47]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTAGGTCGTGATCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAACACAGGTGAGCGTAAAGAGCAAACAGAGTGGC
ATCGCATTGTTTTACATAACCGTTTAGGCGAGATTGCACAGCAATATTTACGCAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACGCGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACCACTGAAATTCGTGGCGATCAAATGCAAAT
GCTCGACTCTGCTAACCGTGGACAATCTGACCAGCAAGATGGTGGCTTTGCTCAACCACGTTTTAACAATAACCAAGGCG
GTTATGGCAATCAGAACCAAGCTCCAGCCACAGGTTATGCGAATCAAAATCAAGGCGGTTTTAACCAAAATCAGGGTGGT
GGCTATGCCAACAATAACCCAAGTGGTTTTGCACCGAAGCCACAAGCTGCGCCTGCAACCGCACCTGCAGATTTAGATGA
TGATTTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.769

100

0.56
  ssb Vibrio cholerae strain A1552

46.429

100

0.476
  ssb Neisseria gonorrhoeae MS11

40.314

100

0.403
  ssb Neisseria meningitidis MC58

38.542

100

0.387

Multiple sequence alignment