Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   GJS34_RS07045 Genome accession   NZ_CP046042
Coordinates   1480412..1481134 (-) Length   240 a.a.
NCBI ID   WP_012677660.1    Uniprot ID   A0AAW3GL08
Organism   Streptococcus equi subsp. zooepidemicus strain TN-714097     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1475412..1486134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS34_RS07020 (GJS34_07045) pstB 1475577..1476329 (-) 753 WP_012515962.1 phosphate ABC transporter ATP-binding protein PstB -
  GJS34_RS07025 (GJS34_07050) pstA 1476331..1477146 (-) 816 WP_014623163.1 phosphate ABC transporter permease PstA -
  GJS34_RS07030 (GJS34_07055) pstC 1477139..1478002 (-) 864 WP_014623164.1 phosphate ABC transporter permease subunit PstC -
  GJS34_RS07035 (GJS34_07060) - 1478072..1478944 (-) 873 WP_014623165.1 substrate-binding domain-containing protein -
  GJS34_RS07040 (GJS34_07065) pnpS 1479103..1480428 (-) 1326 WP_038674148.1 two-component system histidine kinase PnpS -
  GJS34_RS07045 (GJS34_07070) vicR 1480412..1481134 (-) 723 WP_012677660.1 response regulator transcription factor Regulator
  GJS34_RS10460 - 1481305..1481460 (+) 156 WP_012515968.1 SPJ_0845 family protein -
  GJS34_RS07050 (GJS34_07075) - 1481501..1482403 (+) 903 WP_014623168.1 permease -
  GJS34_RS07055 (GJS34_07080) - 1482403..1483218 (+) 816 WP_014623169.1 TIGR03943 family putative permease subunit -
  GJS34_RS07060 (GJS34_07085) - 1483404..1484825 (-) 1422 WP_014623170.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28111.54 Da        Isoelectric Point: 6.1653

>NTDB_id=400591 GJS34_RS07045 WP_012677660.1 1480412..1481134(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain TN-714097]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRAKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=400591 GJS34_RS07045 WP_012677660.1 1480412..1481134(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain TN-714097]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCACTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTGCTAAGGGAAGCAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396

Multiple sequence alignment