Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GJ664_RS03830 | Genome accession | NZ_CP046037 |
| Coordinates | 769866..770378 (+) | Length | 170 a.a. |
| NCBI ID | WP_011373726.1 | Uniprot ID | A0A094Y4Q3 |
| Organism | Latilactobacillus sakei strain CBA3614 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 764866..775378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ664_RS03820 (GJ664_03820) | gyrA | 766721..769294 (+) | 2574 | WP_016264314.1 | DNA gyrase subunit A | - |
| GJ664_RS03825 (GJ664_03825) | rpsF | 769531..769827 (+) | 297 | WP_011373725.1 | 30S ribosomal protein S6 | - |
| GJ664_RS03830 (GJ664_03830) | ssb | 769866..770378 (+) | 513 | WP_011373726.1 | single-stranded DNA-binding protein | Machinery gene |
| GJ664_RS03835 (GJ664_03835) | rpsR | 770409..770648 (+) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| GJ664_RS03840 (GJ664_03840) | - | 770866..772899 (+) | 2034 | WP_016264315.1 | DHH family phosphoesterase | - |
| GJ664_RS03845 (GJ664_03845) | rplI | 772920..773372 (+) | 453 | WP_011373728.1 | 50S ribosomal protein L9 | - |
| GJ664_RS03850 (GJ664_03850) | dnaB | 773503..774900 (+) | 1398 | WP_016264316.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18610.19 Da Isoelectric Point: 4.6856
>NTDB_id=400416 GJ664_RS03830 WP_011373726.1 769866..770378(+) (ssb) [Latilactobacillus sakei strain CBA3614]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=400416 GJ664_RS03830 WP_011373726.1 769866..770378(+) (ssb) [Latilactobacillus sakei strain CBA3614]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssb | Glaesserella parasuis strain SC1401 |
33.69 |
100 |
0.371 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |