Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   POR16_RS01700 Genome accession   NZ_CP046035
Coordinates   352119..353183 (+) Length   354 a.a.
NCBI ID   WP_005888204.1    Uniprot ID   A0AA40P5K0
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347119..358183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS01685 (POR16_01685) - 348036..349304 (+) 1269 WP_005888200.1 malic enzyme-like NAD(P)-binding protein -
  POR16_RS01695 (POR16_01695) - 349467..351908 (-) 2442 WP_371903650.1 penicillin-binding protein 1A -
  POR16_RS01700 (POR16_01700) pilM 352119..353183 (+) 1065 WP_005888204.1 pilus assembly protein PilM Machinery gene
  POR16_RS01705 (POR16_01705) - 353183..353758 (+) 576 WP_005888206.1 PilN domain-containing protein -
  POR16_RS01710 (POR16_01710) pilO 353755..354378 (+) 624 WP_005888208.1 type 4a pilus biogenesis protein PilO -
  POR16_RS01715 (POR16_01715) pilP 354375..354902 (+) 528 WP_005888210.1 type 4a pilus biogenesis lipoprotein PilP -
  POR16_RS01720 (POR16_01720) pilQ 354950..357055 (+) 2106 WP_005888212.1 type IV pilus secretin PilQ Machinery gene
  POR16_RS01725 (POR16_01725) aroK 357060..357578 (+) 519 WP_005888214.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38103.67 Da        Isoelectric Point: 4.7688

>NTDB_id=400373 POR16_RS01700 WP_005888204.1 352119..353183(+) (pilM) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MFELFKKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTSVKIVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSVRNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLAAQLGNGHDELTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTDEIQRRYGLSM
EEAGLAKKQGGLPDDYVSEVLDPFKDALVQQVSRSLQFFFAAGQYNSVDHIMLAGGTASISGLEHLIQRRIGTPTMVANP
FADMALSAKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=400373 POR16_RS01700 WP_005888204.1 352119..353183(+) (pilM) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
GTGTTCGAACTCTTCAAGAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCCACCTCGGTAAAACTCCTGGAATT
GAGTCGTTCCGGCACTCGTTACAAGGTCGAGTCTTACGCAGTCGAGCCGTTGCCGGCCAACGCTGTGGTCGAAAAAAATA
TTGCCGAACTCGAAGGGGTGGGTCAGGCGCTGTCTCGCGTGCTTGCCAAGGCAAAGACCAGCGTCAAGATTGTGGCGGTG
GCCGTTGCCGGGTCCGCCGTTATTACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGACGACATGGAAAACCAGCT
CAAGCTTGAAGCTGATCAGTACATTCCCTATCCGCTTGAAGAAGTCGCCATCGATTTTGAGGTGCAGGGCTATTCGGTCC
GCAACCCGGAACGCGTCGAGGTCCTTCTGGCGGCCTGCCGCAAGGAAAACGTCGAAGTGCGCGAGGCTGCGCTGGCGCTG
GCCGGTCTGACCGCGCGTGTCGTAGATGTCGAAGCCTATGCGCTGGAGCGTTCGTTCGGCCTGCTGGCCGCGCAACTGGG
CAACGGTCATGACGAGCTTACCGTGGCGGTGGTTGATATCGGCGCCACGATGACCACCTTGAGCGTGCTGCACCATGGCC
GGATCATCTATACCCGCGAGCAACTGTTCGGTGGTCGCCAACTGACTGACGAAATTCAGCGCCGTTACGGGCTCTCGATG
GAGGAAGCCGGGCTTGCCAAAAAGCAGGGCGGGCTGCCCGACGACTACGTCAGCGAAGTGCTGGACCCGTTCAAGGATGC
ATTGGTGCAGCAGGTTTCCCGTTCTCTGCAGTTCTTTTTTGCGGCAGGTCAATACAACTCAGTGGATCACATCATGCTGG
CAGGCGGCACGGCTTCAATCTCCGGGCTGGAGCATCTTATTCAGCGGCGCATTGGTACGCCGACTATGGTGGCCAACCCG
TTTGCCGACATGGCTTTGAGCGCCAAGGTCAATGCTGGCGCCCTGGCGAGTGATGCGCCTGCCTTGATGATCGCGTGCGG
TCTGGCGTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

53.672

100

0.537
  pilM Legionella pneumophila strain ERS1305867

47.042

100

0.472

Multiple sequence alignment