Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FOC72_RS10945 Genome accession   NZ_CP054570
Coordinates   2248015..2248605 (+) Length   196 a.a.
NCBI ID   WP_032914006.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2243015..2253605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS10920 (FOC72_10920) - 2243763..2244233 (-) 471 WP_002894101.1 DUF3021 family protein -
  FOC72_RS10925 (FOC72_10925) brsR 2244230..2244670 (-) 441 WP_002894100.1 LytTR family DNA-binding domain-containing protein Regulator
  FOC72_RS10930 (FOC72_10930) hexB 2244855..2246798 (+) 1944 WP_032914008.1 DNA mismatch repair endonuclease MutL Machinery gene
  FOC72_RS10935 (FOC72_10935) - 2246834..2247355 (-) 522 WP_002894097.1 RDD family protein -
  FOC72_RS10940 (FOC72_10940) - 2247339..2247845 (-) 507 WP_032914287.1 helix-turn-helix domain-containing protein -
  FOC72_RS10945 (FOC72_10945) ruvA 2248015..2248605 (+) 591 WP_032914006.1 Holliday junction branch migration protein RuvA Machinery gene
  FOC72_RS10950 (FOC72_10950) - 2248615..2249187 (+) 573 WP_002894092.1 DNA-3-methyladenine glycosylase I -
  FOC72_RS10955 (FOC72_10955) - 2249197..2250045 (-) 849 WP_002894091.1 helix-turn-helix domain-containing protein -
  FOC72_RS10960 (FOC72_10960) - 2250435..2250773 (+) 339 WP_002894090.1 hypothetical protein -
  FOC72_RS10965 (FOC72_10965) - 2250841..2252823 (+) 1983 WP_002894089.1 ABC transporter permease -
  FOC72_RS10970 (FOC72_10970) - 2252823..2253446 (+) 624 WP_002894088.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21598.03 Da        Isoelectric Point: 5.3532

>NTDB_id=400222 FOC72_RS10945 WP_032914006.1 2248015..2248605(+) (ruvA) [Streptococcus sanguinis strain FDAARGOS_770]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGQLHQEAKVYVHQVVREDAELLYGFATEEEKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGLAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=400222 FOC72_RS10945 WP_032914006.1 2248015..2248605(+) (ruvA) [Streptococcus sanguinis strain FDAARGOS_770]
ATGTACGAATATTTTAAAGGAATCATCAGTAAAATAACAGCCAAATACATCGTATTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCCAACCCTTATGCTTACTCAGGGCAGCTTCATCAGGAAGCTAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGATGCGGAGCTCCTTTACGGCTTTGCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGGCCAGTGTCTGCCCTGGCTATTATTGCGGCGGATGATAATGCTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGTAAGAAAACAGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTAGTGGCGG
CGGATGGTCTGGCAGAAAGCAAGGCACCCGTCCAGACTGTGGATAATCAGGAGCTGGAAGAAGCTATGGAAGCCATGCTG
GCTCTGGGGTACAAGGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAGGGAACGACGGATACAGCAGAAAACTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

85.787

100

0.862
  ruvA Streptococcus pneumoniae D39

85.787

100

0.862
  ruvA Streptococcus pneumoniae TIGR4

85.279

100

0.857
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.346

100

0.439