Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GJE05_RS09660 Genome accession   NZ_CP045960
Coordinates   1868332..1868838 (+) Length   168 a.a.
NCBI ID   WP_154079712.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00005726     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1863332..1873838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE05_RS09620 (GJE05_09620) - 1863809..1864237 (+) 429 Protein_1784 pilin -
  GJE05_RS12165 - 1864577..1864702 (+) 126 Protein_1785 pilin -
  GJE05_RS09635 (GJE05_09635) - 1864850..1865857 (-) 1008 WP_061387533.1 IS5 family transposase -
  GJE05_RS12170 (GJE05_09640) - 1865921..1866331 (+) 411 Protein_1787 pilin -
  GJE05_RS11525 - 1866384..1866701 (+) 318 Protein_1788 pilin -
  GJE05_RS11530 - 1866720..1867091 (+) 372 Protein_1789 pilin -
  GJE05_RS09655 (GJE05_09655) - 1867289..1867621 (+) 333 Protein_1790 pilin -
  GJE05_RS09660 (GJE05_09660) pilE 1868332..1868838 (+) 507 WP_154079712.1 pilin Machinery gene
  GJE05_RS09665 (GJE05_09665) lpxC 1869576..1870499 (+) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GJE05_RS09670 (GJE05_09670) gnd 1871439..1872887 (+) 1449 WP_002228813.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17891.27 Da        Isoelectric Point: 7.8412

>NTDB_id=399722 GJE05_RS09660 WP_154079712.1 1868332..1868838(+) (pilE) [Neisseria meningitidis strain AUSMDU00005726]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPGGNSDADVASSADIK
GKYVQSVTVANGVITAQMASSNVNKEIKDKKLSLWAKRQDGSVKWFCGQPVTRAANNTAKDDVAAATGTDKIDTKHLPST
CRDESTAS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=399722 GJE05_RS09660 WP_154079712.1 1868332..1868838(+) (pilE) [Neisseria meningitidis strain AUSMDU00005726]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATCCTTTTGGCTGAAGGTCAAAAATCAGCCG
TCACCGAGTATTACCTGAATCACGGCAAATGGCCCGGCGGCAACAGTGATGCCGACGTGGCATCCTCCGCCGACATCAAA
GGCAAATATGTTCAAAGCGTTACAGTCGCAAACGGCGTCATTACCGCCCAAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCGCCAACAACACCGCCAAAGACGACGTTGCCGCCGCCACCGGCACCGACAAAATCGACACCAAGCACCTGCCGTCAACC
TGCCGCGATGAATCAACTGCCAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

80.357

100

0.804
  pilE Neisseria gonorrhoeae MS11

77.246

99.405

0.768
  pilA Ralstonia pseudosolanacearum GMI1000

37.059

100

0.375
  pilA/pilA1 Eikenella corrodens VA1

35.838

100

0.369

Multiple sequence alignment