Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GJE05_RS02865 Genome accession   NZ_CP045960
Coordinates   538052..538525 (+) Length   157 a.a.
NCBI ID   WP_002229319.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00005726     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533052..543525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE05_RS02840 (GJE05_02840) dnaB 533499..534905 (+) 1407 WP_002219448.1 replicative DNA helicase -
  GJE05_RS02845 (GJE05_02845) pilH 535207..535875 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GJE05_RS02850 (GJE05_02850) pilV 535905..536525 (+) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  GJE05_RS02855 (GJE05_02855) pilJ 536522..537475 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  GJE05_RS02860 (GJE05_02860) pilK 537454..538047 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GJE05_RS02865 (GJE05_02865) pilX 538052..538525 (+) 474 WP_002229319.1 PilX family type IV pilin Machinery gene
  GJE05_RS02870 (GJE05_02870) - 540514..540942 (-) 429 Protein_539 AzlC family ABC transporter permease -
  GJE05_RS02875 (GJE05_02875) dut 541084..541536 (+) 453 WP_002229326.1 dUTP diphosphatase -
  GJE05_RS02880 (GJE05_02880) dapC 541613..542800 (+) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17450.13 Da        Isoelectric Point: 8.8574

>NTDB_id=399697 GJE05_RS02865 WP_002229319.1 538052..538525(+) (pilX) [Neisseria meningitidis strain AUSMDU00005726]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVDFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=399697 GJE05_RS02865 WP_002229319.1 538052..538525(+) (pilX) [Neisseria meningitidis strain AUSMDU00005726]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGGATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

97.452

100

0.975
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873

Multiple sequence alignment