Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   GJE05_RS02855 Genome accession   NZ_CP045960
Coordinates   536522..537475 (+) Length   317 a.a.
NCBI ID   WP_002259883.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00005726     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 531522..542475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE05_RS02830 (GJE05_02830) - 531723..532232 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GJE05_RS02835 (GJE05_02835) - 532749..533336 (-) 588 WP_002222659.1 superoxide dismutase -
  GJE05_RS02840 (GJE05_02840) dnaB 533499..534905 (+) 1407 WP_002219448.1 replicative DNA helicase -
  GJE05_RS02845 (GJE05_02845) pilH 535207..535875 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GJE05_RS02850 (GJE05_02850) pilV 535905..536525 (+) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  GJE05_RS02855 (GJE05_02855) pilJ 536522..537475 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  GJE05_RS02860 (GJE05_02860) pilK 537454..538047 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GJE05_RS02865 (GJE05_02865) pilX 538052..538525 (+) 474 WP_002229319.1 PilX family type IV pilin Machinery gene
  GJE05_RS02870 (GJE05_02870) - 540514..540942 (-) 429 Protein_539 AzlC family ABC transporter permease -
  GJE05_RS02875 (GJE05_02875) dut 541084..541536 (+) 453 WP_002229326.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35030.78 Da        Isoelectric Point: 8.4318

>NTDB_id=399695 GJE05_RS02855 WP_002259883.1 536522..537475(+) (pilJ) [Neisseria meningitidis strain AUSMDU00005726]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKDSLFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASADTTVVSSCA
AISKPGKQILNLEDVKKELKIVSQDKERNGNIARQRHVVNAYAVGRIAGEEGLFRFQLNEKGEWGNPQLLVKKINKMDIR
YIYVSGCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=399695 GJE05_RS02855 WP_002259883.1 536522..537475(+) (pilJ) [Neisseria meningitidis strain AUSMDU00005726]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAGACTCTCTTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCC
GCAATATCGAAACCGGGTAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGA
GCGAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGG
TATATTTATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAG
CGCCCAAGATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAG
ACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

82.334

100

0.823

Multiple sequence alignment