Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | HTZ88_RS07695 | Genome accession | NZ_CP054418 |
| Coordinates | 1507975..1508931 (-) | Length | 318 a.a. |
| NCBI ID | WP_135197795.1 | Uniprot ID | - |
| Organism | Leuconostoc carnosum strain 4010 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1502975..1513931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HTZ88_RS07655 (HTZ88_07590) | - | 1503000..1504256 (-) | 1257 | WP_305068165.1 | acetate/propionate family kinase | - |
| HTZ88_RS07660 (HTZ88_07595) | - | 1504383..1505396 (-) | 1014 | WP_135197790.1 | class I SAM-dependent methyltransferase | - |
| HTZ88_RS07665 (HTZ88_07600) | - | 1505428..1505724 (-) | 297 | WP_019040211.1 | hypothetical protein | - |
| HTZ88_RS07670 (HTZ88_07605) | - | 1505725..1506141 (-) | 417 | WP_172600984.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| HTZ88_RS07675 (HTZ88_07610) | - | 1506125..1506337 (-) | 213 | WP_135197792.1 | hypothetical protein | - |
| HTZ88_RS07680 (HTZ88_07615) | - | 1506312..1506704 (-) | 393 | WP_135197793.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| HTZ88_RS07685 (HTZ88_07620) | comGC | 1506688..1506999 (-) | 312 | WP_014974861.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| HTZ88_RS07690 (HTZ88_07625) | - | 1506996..1508033 (-) | 1038 | WP_135198199.1 | type II secretion system F family protein | - |
| HTZ88_RS07695 (HTZ88_07630) | comGA | 1507975..1508931 (-) | 957 | WP_135197795.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| HTZ88_RS07700 (HTZ88_07635) | - | 1509029..1510381 (-) | 1353 | WP_014974864.1 | glucose-6-phosphate isomerase | - |
| HTZ88_RS07705 (HTZ88_07640) | - | 1510505..1511206 (-) | 702 | WP_135197796.1 | glucosamine-6-phosphate deaminase | - |
| HTZ88_RS07710 (HTZ88_07645) | - | 1511335..1512612 (-) | 1278 | WP_135197797.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| HTZ88_RS07715 (HTZ88_07650) | - | 1512599..1513705 (-) | 1107 | WP_014974867.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36340.93 Da Isoelectric Point: 6.3080
>NTDB_id=399693 HTZ88_RS07695 WP_135197795.1 1507975..1508931(-) (comGA) [Leuconostoc carnosum strain 4010]
MNDILEAAIEQKVNDIYLLPTEDQQYVIKFHLDGQAVTFKQISEINAQTMISALKYRAKMNISERRRPQLGRFQNDEIWL
RVSTVGDFLNRETVVLRLIYPQRQTQNWLVSQQFEAIQTALPSAGLFLISGPTGSGKTTTLYRLLDQLADDKLVLTIEDP
VEIQQPKFVQLQVNEDAGIYYDELIKVALRHRPEILLVGEIRDKKTAQAAVQAALSGHLVLSTVHAMSARDVIVRLQDLG
VDHMKLMAALAGVVYQRLLPTNNHQQAAIMDMLNDHLLERVMRGDEIPKFSKKWQEVLQHAMEQQIISQETCEIYQKL
MNDILEAAIEQKVNDIYLLPTEDQQYVIKFHLDGQAVTFKQISEINAQTMISALKYRAKMNISERRRPQLGRFQNDEIWL
RVSTVGDFLNRETVVLRLIYPQRQTQNWLVSQQFEAIQTALPSAGLFLISGPTGSGKTTTLYRLLDQLADDKLVLTIEDP
VEIQQPKFVQLQVNEDAGIYYDELIKVALRHRPEILLVGEIRDKKTAQAAVQAALSGHLVLSTVHAMSARDVIVRLQDLG
VDHMKLMAALAGVVYQRLLPTNNHQQAAIMDMLNDHLLERVMRGDEIPKFSKKWQEVLQHAMEQQIISQETCEIYQKL
Nucleotide
Download Length: 957 bp
>NTDB_id=399693 HTZ88_RS07695 WP_135197795.1 1507975..1508931(-) (comGA) [Leuconostoc carnosum strain 4010]
ATGAATGATATTTTAGAGGCAGCTATTGAACAAAAAGTAAATGATATTTATCTTTTACCCACCGAGGATCAACAATATGT
GATTAAGTTTCATCTTGATGGTCAAGCAGTGACATTTAAACAAATATCTGAAATAAATGCGCAAACGATGATTTCAGCGC
TTAAATATCGTGCCAAAATGAATATTTCAGAACGCAGGCGACCACAATTAGGTCGTTTTCAAAATGATGAGATTTGGCTA
CGTGTATCTACTGTTGGTGATTTTTTGAACCGAGAAACAGTTGTTTTGCGACTTATTTATCCGCAAAGGCAGACACAAAA
TTGGCTCGTTTCTCAACAGTTTGAAGCAATACAGACAGCATTGCCGAGTGCAGGTCTATTTTTAATTTCTGGGCCAACAG
GGTCTGGGAAAACAACAACTCTTTATCGTCTATTAGACCAATTAGCAGATGATAAACTCGTATTGACAATTGAAGATCCA
GTTGAAATTCAACAACCAAAATTTGTGCAATTACAAGTTAATGAAGATGCTGGTATTTATTATGATGAGTTAATCAAAGT
AGCACTACGACATCGACCAGAAATTTTATTAGTAGGTGAAATTCGTGATAAGAAAACGGCGCAGGCAGCCGTTCAAGCCG
CACTAAGTGGGCATTTGGTATTAAGTACTGTGCATGCTATGTCAGCACGTGATGTTATTGTACGGTTACAGGATCTAGGC
GTCGATCATATGAAACTAATGGCGGCATTGGCTGGTGTTGTTTATCAACGTTTATTGCCAACTAACAACCATCAACAAGC
AGCCATCATGGATATGCTCAATGATCATCTACTTGAACGTGTTATGCGTGGTGATGAGATTCCTAAATTTTCAAAAAAAT
GGCAGGAGGTGTTACAACATGCAATGGAACAGCAAATTATTTCGCAAGAAACATGTGAAATCTATCAAAAGCTTTAG
ATGAATGATATTTTAGAGGCAGCTATTGAACAAAAAGTAAATGATATTTATCTTTTACCCACCGAGGATCAACAATATGT
GATTAAGTTTCATCTTGATGGTCAAGCAGTGACATTTAAACAAATATCTGAAATAAATGCGCAAACGATGATTTCAGCGC
TTAAATATCGTGCCAAAATGAATATTTCAGAACGCAGGCGACCACAATTAGGTCGTTTTCAAAATGATGAGATTTGGCTA
CGTGTATCTACTGTTGGTGATTTTTTGAACCGAGAAACAGTTGTTTTGCGACTTATTTATCCGCAAAGGCAGACACAAAA
TTGGCTCGTTTCTCAACAGTTTGAAGCAATACAGACAGCATTGCCGAGTGCAGGTCTATTTTTAATTTCTGGGCCAACAG
GGTCTGGGAAAACAACAACTCTTTATCGTCTATTAGACCAATTAGCAGATGATAAACTCGTATTGACAATTGAAGATCCA
GTTGAAATTCAACAACCAAAATTTGTGCAATTACAAGTTAATGAAGATGCTGGTATTTATTATGATGAGTTAATCAAAGT
AGCACTACGACATCGACCAGAAATTTTATTAGTAGGTGAAATTCGTGATAAGAAAACGGCGCAGGCAGCCGTTCAAGCCG
CACTAAGTGGGCATTTGGTATTAAGTACTGTGCATGCTATGTCAGCACGTGATGTTATTGTACGGTTACAGGATCTAGGC
GTCGATCATATGAAACTAATGGCGGCATTGGCTGGTGTTGTTTATCAACGTTTATTGCCAACTAACAACCATCAACAAGC
AGCCATCATGGATATGCTCAATGATCATCTACTTGAACGTGTTATGCGTGGTGATGAGATTCCTAAATTTTCAAAAAAAT
GGCAGGAGGTGTTACAACATGCAATGGAACAGCAAATTATTTCGCAAGAAACATGTGAAATCTATCAAAAGCTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Latilactobacillus sakei subsp. sakei 23K |
44.28 |
85.22 |
0.377 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
41.053 |
89.623 |
0.368 |
| comGA | Streptococcus mutans UA140 |
38.796 |
94.025 |
0.365 |
| comGA | Streptococcus mutans UA159 |
38.796 |
94.025 |
0.365 |