Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   HTZ88_RS02615 Genome accession   NZ_CP054418
Coordinates   471227..473257 (+) Length   676 a.a.
NCBI ID   WP_135198074.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 466227..478257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS02575 (HTZ88_02560) - 467410..467658 (+) 249 WP_081579528.1 hypothetical protein -
  HTZ88_RS02580 (HTZ88_02565) - 467615..468367 (-) 753 WP_014973949.1 Abi-alpha family protein -
  HTZ88_RS02585 (HTZ88_02570) - 468433..468591 (-) 159 WP_014973950.1 hypothetical protein -
  HTZ88_RS02590 (HTZ88_02575) - 468675..468950 (-) 276 WP_014973951.1 hypothetical protein -
  HTZ88_RS02595 (HTZ88_02580) - 469036..469638 (-) 603 WP_014973952.1 DUF1643 domain-containing protein -
  HTZ88_RS02600 - 469703..469981 (-) 279 WP_014973953.1 ImmA/IrrE family metallo-endopeptidase -
  HTZ88_RS02605 - 469994..470134 (-) 141 WP_019040553.1 hypothetical protein -
  HTZ88_RS02610 (HTZ88_02590) - 470247..470771 (-) 525 WP_014973954.1 NADPH-dependent FMN reductase -
  HTZ88_RS02615 (HTZ88_02595) recG/mmsA 471227..473257 (+) 2031 WP_135198074.1 ATP-dependent DNA helicase RecG Machinery gene
  HTZ88_RS02620 (HTZ88_02600) hexA 473303..475897 (+) 2595 WP_014973956.1 DNA mismatch repair protein MutS Machinery gene
  HTZ88_RS02625 (HTZ88_02605) hexB 475991..477976 (+) 1986 WP_014973957.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 75120.78 Da        Isoelectric Point: 5.2217

>NTDB_id=399659 HTZ88_RS02615 WP_135198074.1 471227..473257(+) (recG/mmsA) [Leuconostoc carnosum strain 4010]
MIILADNVNVLPGVGPKRLEALHELDIFTIEDLISYFPFRYEDLGERLPSETLDGEKVTFKGIVSTPPVVSRFGKKNQTR
FGLLIDHENVRVTFFNQPWIAQNIDVGQEAAIYGTYNAAKAALTGMKMINASADALDPIYPASKQVSGKTIRHLVELAWA
DVRGTVDSLVPENIRTKYRLLDRNQQIENMHFPPDMPAAKAARRSSAFEEFFVFQMRLQLLKLADQNFAGEAVNYDSEAL
RAFENQLPYTLTSAQHKVIDEILQDQKRPRHMNRLLQGDVGSGKTVVAAMAMYAAVTGGLQAVMMAPTEILAQQHAINLS
QLFDNAGLSLRIELLTSGLKVTARRQLLADLVSGEIDIIVGTHALLQPDVAFHHLGLAVIDEQHRFGVNQRAKLRENGVN
PDILAMTATPIPRTLSITAYGEMDVSVIDQLPSGRKTIQTTRLSHNQLDQAISFVKTQIDDGAQAYIVTPLIEESETLDV
QNATAMYETMQLEFPQYSIGLLHGRLSNEEKKVLMADFKANRIQILVATTVIEVGVDVPNASIMLILDADRFGLAQLHQL
RGRVGRGTRQSYTMLIADPKTDYGTARLDAMVETTDGFVLAQRDLELRGSGDILGTKQSGVPEFAVGDPIKDLTMMEIAQ
QEAITLVSQDDWDQHPDNQALVDYLSRTMARYRHFD

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=399659 HTZ88_RS02615 WP_135198074.1 471227..473257(+) (recG/mmsA) [Leuconostoc carnosum strain 4010]
ATGATTATACTCGCTGATAATGTTAATGTACTGCCTGGTGTTGGACCAAAAAGGTTAGAGGCTTTACATGAATTAGACAT
TTTTACAATTGAAGATTTGATTAGTTATTTTCCCTTTCGTTATGAAGATTTAGGAGAACGTCTACCTTCAGAAACACTAG
ATGGTGAGAAGGTGACTTTTAAAGGAATTGTGAGTACACCACCAGTAGTCTCACGCTTCGGCAAAAAAAATCAAACGCGT
TTTGGATTACTAATTGATCATGAAAATGTGCGGGTTACTTTTTTTAATCAACCTTGGATTGCTCAAAATATTGACGTAGG
ACAAGAGGCTGCGATTTACGGCACTTATAATGCGGCTAAAGCAGCGTTGACTGGCATGAAAATGATCAATGCGAGTGCAG
ATGCGTTGGATCCAATTTATCCTGCATCAAAACAAGTGAGTGGCAAAACAATACGTCATCTGGTTGAATTAGCTTGGGCT
GACGTACGTGGCACGGTTGACTCATTAGTTCCTGAAAATATACGGACTAAGTATCGCCTACTCGATCGTAATCAACAAAT
AGAAAACATGCATTTTCCTCCTGATATGCCAGCAGCAAAAGCAGCGCGGCGTAGTAGTGCTTTTGAGGAATTTTTTGTAT
TTCAAATGCGATTGCAACTTTTAAAGTTAGCTGATCAAAATTTTGCTGGTGAGGCTGTGAACTATGACAGTGAGGCATTG
CGGGCGTTTGAAAACCAATTACCCTATACCTTGACATCGGCACAACATAAAGTGATCGATGAAATTTTACAAGATCAAAA
ACGGCCACGACATATGAACCGCTTATTACAAGGGGATGTTGGTTCAGGGAAAACAGTTGTCGCTGCAATGGCAATGTATG
CGGCGGTGACAGGCGGATTACAAGCAGTGATGATGGCACCAACAGAAATATTGGCACAACAGCATGCCATAAATTTATCT
CAACTGTTTGATAACGCTGGGTTATCACTACGCATTGAATTATTAACCAGTGGTTTGAAAGTGACGGCTCGTCGGCAATT
ATTAGCTGACTTAGTCAGTGGTGAAATTGATATTATCGTTGGCACACATGCTTTATTACAACCCGACGTTGCCTTTCATC
ATTTAGGTTTAGCAGTCATTGATGAGCAACATCGTTTCGGCGTTAATCAACGTGCTAAATTACGTGAAAACGGCGTAAAT
CCAGATATTTTGGCGATGACAGCAACGCCAATCCCACGTACCTTATCGATTACTGCTTATGGTGAAATGGATGTTTCAGT
CATTGATCAACTACCAAGCGGTCGTAAAACAATTCAAACAACTCGTCTGAGCCATAATCAATTAGATCAAGCAATTAGTT
TTGTTAAAACGCAGATTGACGATGGCGCGCAGGCATACATTGTGACACCGCTAATTGAAGAGTCCGAAACACTAGATGTT
CAAAATGCAACTGCCATGTATGAGACAATGCAATTAGAATTTCCGCAATATAGTATAGGTTTATTGCATGGTCGACTATC
GAACGAAGAAAAAAAGGTCTTAATGGCTGATTTCAAAGCCAATCGTATTCAAATTTTAGTTGCGACAACAGTCATTGAAG
TCGGGGTTGATGTACCAAATGCTAGTATTATGCTGATTTTAGATGCGGATCGTTTTGGTTTAGCGCAGTTGCATCAATTA
CGTGGTCGTGTTGGTCGTGGCACACGACAATCTTATACGATGCTAATTGCTGACCCTAAGACAGATTATGGCACAGCACG
CTTGGATGCAATGGTTGAGACAACAGATGGTTTTGTGTTAGCTCAACGTGATTTGGAATTAAGAGGTTCTGGGGATATTT
TAGGGACAAAGCAATCTGGTGTACCGGAATTTGCAGTGGGTGATCCAATTAAAGATTTAACTATGATGGAAATTGCGCAA
CAAGAGGCAATTACGTTAGTCAGCCAAGATGACTGGGATCAACACCCTGATAATCAAGCATTAGTTGATTATTTATCTCG
GACAATGGCGCGTTATCGGCATTTTGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-156)

Helicase conserved C-terminal domain (Helicase_C)

(458-567)

DEAD/DEAH box helicase (DEAD)

(252-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

49.096

98.225

0.482
  recG/mmsA Streptococcus pneumoniae R36A

49.096

98.225

0.482
  recG Bacillus subtilis subsp. subtilis str. 168

45.934

98.225

0.451
  recG Neisseria meningitidis strain C311

37.979

96.598

0.367