Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GJE16_RS09635 Genome accession   NZ_CP045931
Coordinates   1882567..1883520 (-) Length   317 a.a.
NCBI ID   WP_000345117.1    Uniprot ID   A0AAX3HFX0
Organism   Streptococcus pneumoniae strain AUSMDU00010538     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877567..1888520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE16_RS09610 (GJE16_09610) - 1878328..1878951 (-) 624 WP_000932655.1 hypothetical protein -
  GJE16_RS09615 (GJE16_09615) jag 1879002..1879988 (-) 987 WP_000260025.1 RNA-binding cell elongation regulator Jag/EloR -
  GJE16_RS09620 (GJE16_09620) - 1880007..1880831 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  GJE16_RS09625 (GJE16_09625) rnpA 1880806..1881177 (-) 372 WP_000739246.1 ribonuclease P protein component -
  GJE16_RS11270 - 1881194..1881325 (-) 132 WP_000768904.1 hypothetical protein -
  GJE16_RS09630 (GJE16_09630) - 1881326..1882516 (-) 1191 WP_000167766.1 acetate kinase -
  GJE16_RS09635 (GJE16_09635) comYH 1882567..1883520 (-) 954 WP_000345117.1 class I SAM-dependent methyltransferase Machinery gene
  GJE16_RS09645 (GJE16_09645) - 1883581..1884174 (-) 594 Protein_1867 class I SAM-dependent methyltransferase -
  GJE16_RS09650 (GJE16_09650) comGG/cglG 1884311..1884724 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  GJE16_RS09655 (GJE16_09655) comGF/cglF 1884702..1885163 (-) 462 WP_000250530.1 competence type IV pilus minor pilin ComGF Machinery gene
  GJE16_RS09660 (GJE16_09660) comGE/cglE 1885126..1885428 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  GJE16_RS09665 (GJE16_09665) comGD/cglD 1885391..1885795 (-) 405 WP_000588006.1 competence type IV pilus minor pilin ComGD Machinery gene
  GJE16_RS09670 (GJE16_09670) comGC/cglC 1885788..1886114 (-) 327 WP_000738638.1 comG operon protein ComGC Machinery gene
  GJE16_RS09675 (GJE16_09675) comGB/cglB 1886116..1887132 (-) 1017 WP_075270915.1 competence type IV pilus assembly protein ComGB Machinery gene
  GJE16_RS09680 (GJE16_09680) comGA/cglA/cilD 1887080..1888021 (-) 942 WP_000249556.1 competence type IV pilus ATPase ComGA Machinery gene
  GJE16_RS09685 (GJE16_09685) - 1888096..1888461 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35719.88 Da        Isoelectric Point: 4.2434

>NTDB_id=399437 GJE16_RS09635 WP_000345117.1 1882567..1883520(-) (comYH) [Streptococcus pneumoniae strain AUSMDU00010538]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGET
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGFKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=399437 GJE16_RS09635 WP_000345117.1 1882567..1883520(-) (comYH) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGGATTTTGAAAAAATTGAACAAGCCTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGGAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTACTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGTTTAAGTACCTCAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

53.994

98.738

0.533
  comYH Streptococcus mutans UA159

53.674

98.738

0.53

Multiple sequence alignment