Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGD/cglD   Type   Machinery gene
Locus tag   GJE16_RS09665 Genome accession   NZ_CP045931
Coordinates   1885391..1885795 (-) Length   134 a.a.
NCBI ID   WP_000588006.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain AUSMDU00010538     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1880391..1890795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE16_RS09625 (GJE16_09625) rnpA 1880806..1881177 (-) 372 WP_000739246.1 ribonuclease P protein component -
  GJE16_RS11270 - 1881194..1881325 (-) 132 WP_000768904.1 hypothetical protein -
  GJE16_RS09630 (GJE16_09630) - 1881326..1882516 (-) 1191 WP_000167766.1 acetate kinase -
  GJE16_RS09635 (GJE16_09635) comYH 1882567..1883520 (-) 954 WP_000345117.1 class I SAM-dependent methyltransferase Machinery gene
  GJE16_RS09645 (GJE16_09645) - 1883581..1884174 (-) 594 Protein_1867 class I SAM-dependent methyltransferase -
  GJE16_RS09650 (GJE16_09650) comGG/cglG 1884311..1884724 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  GJE16_RS09655 (GJE16_09655) comGF/cglF 1884702..1885163 (-) 462 WP_000250530.1 competence type IV pilus minor pilin ComGF Machinery gene
  GJE16_RS09660 (GJE16_09660) comGE/cglE 1885126..1885428 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  GJE16_RS09665 (GJE16_09665) comGD/cglD 1885391..1885795 (-) 405 WP_000588006.1 competence type IV pilus minor pilin ComGD Machinery gene
  GJE16_RS09670 (GJE16_09670) comGC/cglC 1885788..1886114 (-) 327 WP_000738638.1 comG operon protein ComGC Machinery gene
  GJE16_RS09675 (GJE16_09675) comGB/cglB 1886116..1887132 (-) 1017 WP_075270915.1 competence type IV pilus assembly protein ComGB Machinery gene
  GJE16_RS09680 (GJE16_09680) comGA/cglA/cilD 1887080..1888021 (-) 942 WP_000249556.1 competence type IV pilus ATPase ComGA Machinery gene
  GJE16_RS09685 (GJE16_09685) - 1888096..1888461 (-) 366 WP_000286415.1 DUF1033 family protein -
  GJE16_RS09690 (GJE16_09690) - 1888612..1889670 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 134 a.a.        Molecular weight: 14636.81 Da        Isoelectric Point: 10.2164

>NTDB_id=399441 GJE16_RS09665 WP_000588006.1 1885391..1885795(-) (comGD/cglD) [Streptococcus pneumoniae strain AUSMDU00010538]
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLPV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=399441 GJE16_RS09665 WP_000588006.1 1885391..1885795(-) (comGD/cglD) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGCCCCATCAGGTCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

97.761

100

0.978

  comGD/cglD Streptococcus pneumoniae Rx1

95.522

100

0.955

  comGD/cglD Streptococcus pneumoniae D39

95.522

100

0.955

  comGD/cglD Streptococcus pneumoniae R6

95.522

100

0.955

  comGD/cglD Streptococcus mitis NCTC 12261

95.489

99.254

0.948

  comGD/cglD Streptococcus mitis SK321

94.776

100

0.948

  comYD Streptococcus gordonii str. Challis substr. CH1

58.268

94.776

0.552

  comYD Streptococcus mutans UA140

49.219

95.522

0.47

  comYD Streptococcus mutans UA159

49.219

95.522

0.47


Multiple sequence alignment