Detailed information
Overview
| Name | comGD/cglD | Type | Machinery gene |
| Locus tag | GJE16_RS09665 | Genome accession | NZ_CP045931 |
| Coordinates | 1885391..1885795 (-) | Length | 134 a.a. |
| NCBI ID | WP_000588006.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain AUSMDU00010538 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1880391..1890795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJE16_RS09625 (GJE16_09625) | rnpA | 1880806..1881177 (-) | 372 | WP_000739246.1 | ribonuclease P protein component | - |
| GJE16_RS11270 | - | 1881194..1881325 (-) | 132 | WP_000768904.1 | hypothetical protein | - |
| GJE16_RS09630 (GJE16_09630) | - | 1881326..1882516 (-) | 1191 | WP_000167766.1 | acetate kinase | - |
| GJE16_RS09635 (GJE16_09635) | comYH | 1882567..1883520 (-) | 954 | WP_000345117.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GJE16_RS09645 (GJE16_09645) | - | 1883581..1884174 (-) | 594 | Protein_1867 | class I SAM-dependent methyltransferase | - |
| GJE16_RS09650 (GJE16_09650) | comGG/cglG | 1884311..1884724 (-) | 414 | WP_000265630.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GJE16_RS09655 (GJE16_09655) | comGF/cglF | 1884702..1885163 (-) | 462 | WP_000250530.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GJE16_RS09660 (GJE16_09660) | comGE/cglE | 1885126..1885428 (-) | 303 | WP_000413382.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GJE16_RS09665 (GJE16_09665) | comGD/cglD | 1885391..1885795 (-) | 405 | WP_000588006.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GJE16_RS09670 (GJE16_09670) | comGC/cglC | 1885788..1886114 (-) | 327 | WP_000738638.1 | comG operon protein ComGC | Machinery gene |
| GJE16_RS09675 (GJE16_09675) | comGB/cglB | 1886116..1887132 (-) | 1017 | WP_075270915.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GJE16_RS09680 (GJE16_09680) | comGA/cglA/cilD | 1887080..1888021 (-) | 942 | WP_000249556.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GJE16_RS09685 (GJE16_09685) | - | 1888096..1888461 (-) | 366 | WP_000286415.1 | DUF1033 family protein | - |
| GJE16_RS09690 (GJE16_09690) | - | 1888612..1889670 (-) | 1059 | WP_000649471.1 | zinc-dependent alcohol dehydrogenase family protein | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 14636.81 Da Isoelectric Point: 10.2164
>NTDB_id=399441 GJE16_RS09665 WP_000588006.1 1885391..1885795(-) (comGD/cglD) [Streptococcus pneumoniae strain AUSMDU00010538]
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLPV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN
MIKAFTMLESLLALSLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLPV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN
Nucleotide
Download Length: 405 bp
>NTDB_id=399441 GJE16_RS09665 WP_000588006.1 1885391..1885795(-) (comGD/cglD) [Streptococcus pneumoniae strain AUSMDU00010538]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGCCCCATCAGGTCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGCTTTGAGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGCCCCATCAGGTCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD/cglD | Streptococcus pneumoniae TIGR4 |
97.761 |
100 |
0.978 |
| comGD/cglD | Streptococcus pneumoniae Rx1 |
95.522 |
100 |
0.955 |
| comGD/cglD | Streptococcus pneumoniae D39 |
95.522 |
100 |
0.955 |
| comGD/cglD | Streptococcus pneumoniae R6 |
95.522 |
100 |
0.955 |
| comGD/cglD | Streptococcus mitis NCTC 12261 |
95.489 |
99.254 |
0.948 |
| comGD/cglD | Streptococcus mitis SK321 |
94.776 |
100 |
0.948 |
| comYD | Streptococcus gordonii str. Challis substr. CH1 |
58.268 |
94.776 |
0.552 |
| comYD | Streptococcus mutans UA140 |
49.219 |
95.522 |
0.47 |
| comYD | Streptococcus mutans UA159 |
49.219 |
95.522 |
0.47 |