Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GJE18_RS04470 Genome accession   NZ_CP045927
Coordinates   885648..886529 (+) Length   293 a.a.
NCBI ID   WP_107368344.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 1379     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 880648..891529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE18_RS04445 (GJE18_04430) ylqF 881123..882004 (+) 882 WP_060552473.1 ribosome biogenesis GTPase YlqF -
  GJE18_RS04450 (GJE18_04435) - 881994..882770 (+) 777 WP_060550900.1 ribonuclease HII -
  GJE18_RS04455 (GJE18_04440) - 882857..883126 (+) 270 WP_037564707.1 hypothetical protein -
  GJE18_RS04460 (GJE18_04445) sucC 883339..884505 (+) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  GJE18_RS04465 (GJE18_04450) sucD 884527..885435 (+) 909 WP_060550901.1 succinate--CoA ligase subunit alpha -
  GJE18_RS04470 (GJE18_04455) dprA 885648..886529 (+) 882 WP_107368344.1 DNA-processing protein DprA Machinery gene
  GJE18_RS04475 (GJE18_04460) topA 886624..888693 (+) 2070 WP_060550903.1 type I DNA topoisomerase -
  GJE18_RS04480 (GJE18_04465) trmFO 888706..890010 (+) 1305 WP_105995826.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GJE18_RS04485 (GJE18_04470) xerC 890131..891021 (+) 891 WP_060550905.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33206.66 Da        Isoelectric Point: 9.7090

>NTDB_id=399300 GJE18_RS04470 WP_107368344.1 885648..886529(+) (dprA) [Staphylococcus agnetis strain 1379]
MLLENLIKLRYAGFTTQQLYRIFKRPIDVLSSDITPILHQYITHQSPSSLRLKLQTFHTLSASNILQQLRHDNIFPITIL
DEQFPTLLKEIYQPPLLLFCKGDLTHVTISKYKLGIVGARDCTLYSEKAVNYLLHEMRHAPLIIVSGLAKGTDALAHDYA
LKYSLPTIGVLGFGHHYHYPSVTKSLRHTIEMNRRGLTISEYPPMTPPAKFRFPERNRIISGLSHGVLVTEAKEKSGALI
TLDQALEHNRNVYVLPGDMFNKHTKGNMMRIKEGAEIVLSAADILKDLNTSIQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=399300 GJE18_RS04470 WP_107368344.1 885648..886529(+) (dprA) [Staphylococcus agnetis strain 1379]
GTGCTATTAGAAAATTTAATCAAATTGCGATATGCAGGTTTCACGACACAGCAACTTTATCGCATTTTTAAGCGACCTAT
TGACGTTTTGTCATCAGACATCACACCTATTTTGCATCAATATATTACGCACCAAAGTCCTTCTTCGTTACGATTGAAAC
TGCAAACATTTCATACATTAAGTGCTTCTAATATTTTACAACAACTTCGTCACGACAACATTTTTCCAATCACCATATTA
GATGAGCAATTCCCAACACTTTTAAAAGAAATTTACCAACCGCCACTTTTATTATTTTGTAAAGGCGACCTGACACACGT
TACCATTTCTAAGTACAAACTCGGCATAGTGGGTGCACGTGACTGTACGCTTTATAGCGAAAAAGCTGTCAATTATCTTC
TTCATGAGATGAGACACGCACCTTTAATCATTGTATCTGGTCTTGCGAAAGGAACAGATGCACTTGCGCATGATTATGCG
CTCAAATATTCATTACCTACAATAGGTGTGTTAGGGTTTGGGCATCATTATCATTATCCTTCAGTAACAAAATCACTTCG
ACACACAATTGAAATGAACCGACGAGGATTAACTATTAGTGAATATCCTCCTATGACGCCACCCGCAAAATTCCGTTTTC
CTGAACGTAATCGTATAATCAGTGGTCTGAGCCATGGCGTTCTAGTTACAGAAGCAAAAGAGAAAAGTGGTGCACTTATC
ACGTTAGATCAAGCATTAGAACATAATCGAAATGTGTATGTACTCCCTGGAGATATGTTTAATAAACACACAAAAGGTAA
TATGATGCGTATTAAGGAAGGTGCTGAAATTGTACTTTCAGCAGCAGATATTTTGAAAGATTTGAATACGTCAATTCAGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.526

97.27

0.491
  dprA Staphylococcus aureus N315

50.526

97.27

0.491
  dprA Streptococcus mutans UA159

36.149

100

0.365

Multiple sequence alignment