Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GJE18_RS00285 Genome accession   NZ_CP045927
Coordinates   54045..54551 (+) Length   168 a.a.
NCBI ID   WP_037565084.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 1379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 49045..59551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE18_RS00250 (GJE18_00250) - 49127..49960 (+) 834 WP_370672131.1 ParB/RepB/Spo0J family partition protein -
  GJE18_RS00255 (GJE18_00255) - 49988..50878 (+) 891 WP_037565100.1 mechanosensitive ion channel family protein -
  GJE18_RS00260 (GJE18_00260) - 50910..51116 (+) 207 WP_037565097.1 DUF951 domain-containing protein -
  GJE18_RS00265 (GJE18_00265) ychF 51123..52220 (+) 1098 WP_060552190.1 redox-regulated ATPase YchF -
  GJE18_RS00270 (GJE18_00270) - 52267..52488 (-) 222 WP_103345228.1 hypothetical protein -
  GJE18_RS00275 (GJE18_00275) - 52880..53515 (-) 636 WP_107368688.1 NAD(P)-dependent oxidoreductase -
  GJE18_RS00280 (GJE18_00280) rpsF 53725..54021 (+) 297 WP_037565086.1 30S ribosomal protein S6 -
  GJE18_RS00285 (GJE18_00285) ssbA 54045..54551 (+) 507 WP_037565084.1 single-stranded DNA-binding protein Machinery gene
  GJE18_RS00290 (GJE18_00290) rpsR 54597..54839 (+) 243 WP_037565082.1 30S ribosomal protein S18 -
  GJE18_RS00295 (GJE18_00295) - 54996..55697 (+) 702 WP_060552193.1 CPBP family intramembrane glutamic endopeptidase -
  GJE18_RS00300 (GJE18_00300) - 55770..56147 (-) 378 WP_060552194.1 iron chaperone -
  GJE18_RS00305 (GJE18_00305) - 56302..56604 (+) 303 WP_060552195.1 PadR family transcriptional regulator -
  GJE18_RS00310 (GJE18_00310) chrA 56617..57774 (+) 1158 WP_060552196.1 chromate efflux transporter -
  GJE18_RS00315 (GJE18_00315) - 57898..59094 (+) 1197 WP_107368689.1 glycerate kinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18750.30 Da        Isoelectric Point: 5.1957

>NTDB_id=399294 GJE18_RS00285 WP_037565084.1 54045..54551(+) (ssbA) [Staphylococcus agnetis strain 1379]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQSFGGQQQGQNSSYQNNNNHSSNNDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=399294 GJE18_RS00285 WP_037565084.1 54045..54551(+) (ssbA) [Staphylococcus agnetis strain 1379]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACAAAAGATCCAGAATACAGAACGACACCCTCAGGTGTAGGCGTAGC
GACGTTTACTTTAGCAGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAAAACGTGAGCAATTTCTTGTTCAAAGGGAGTCTCGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACAGAAGTTGTGTGTGACAGTGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAAGTTTCGGTGGACAACAACAAGGTC
AAAATTCATCATATCAAAACAACAACAATCATTCATCGAACAATGATAACCCATTTGCCAATGCGAATGGCCCTATCGAT
ATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.407

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.363

Multiple sequence alignment