Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GIG89_RS02260 Genome accession   NZ_CP045924
Coordinates   463829..466039 (+) Length   736 a.a.
NCBI ID   WP_153924542.1    Uniprot ID   -
Organism   Lactococcus petauri strain CF11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458829..471039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIG89_RS02240 - 459448..460092 (+) 645 WP_019292099.1 CPBP family intramembrane glutamic endopeptidase -
  GIG89_RS02245 - 460239..461795 (+) 1557 WP_019292098.1 ATP-binding cassette domain-containing protein -
  GIG89_RS02250 - 461961..463136 (+) 1176 WP_153924539.1 SLC13 family permease -
  GIG89_RS02255 - 463194..463809 (+) 616 Protein_432 ComEA family DNA-binding protein -
  GIG89_RS02260 comEC 463829..466039 (+) 2211 WP_153924542.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GIG89_RS02265 - 466194..466970 (+) 777 WP_029343492.1 alpha/beta hydrolase family protein -
  GIG89_RS02270 - 467166..467381 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  GIG89_RS02275 atpB 467436..468149 (+) 714 WP_004259176.1 F0F1 ATP synthase subunit A -
  GIG89_RS02280 atpF 468163..468669 (+) 507 WP_004259173.1 F0F1 ATP synthase subunit B -
  GIG89_RS02285 - 468684..469211 (+) 528 WP_153924545.1 F0F1 ATP synthase subunit delta -
  GIG89_RS02290 atpA 469277..470785 (+) 1509 WP_004259170.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 85147.12 Da        Isoelectric Point: 9.7729

>NTDB_id=399186 GIG89_RS02260 WP_153924542.1 463829..466039(+) (comEC) [Lactococcus petauri strain CF11]
MKQKFTLIYLVYLLVFVYFLIFSFSWPLLILSLFSLFIAFYRQYYSLLALLLCFSFFLLMVKKETEVQEIQQPEKISKIT
PYMDTLQVNGNRLSFRGEVNGRDFQAFYTLTSEKEKEYFKNLRIKGIFYIEGTLDIPEEQRNFSSFDYRKYLRTQGIYRL
LKIEKIEGFEEKHDFDLRLVRRKAILWTQEHFPSPMSSYMTGLLFGWLDKDFEEMGELYTSLGIIHLFALSGMQVNFFIE
LLRNILLRLGLSRKLVYFIQIPFSIFYAFLTGLSLSILRALLQKNIPIKNSSDRFSITFLLLMIFSPYFLLTTGGQLTML
YSFLITFFSQKFNELKGLKRALLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSLIFDFLLLPGLLFVFLLSLVGIDLT
LLNPFFIILESIVRLVGSLFDKPIVFGKPNLIFLLLLFMLSGLALDFYRKRNWNLVVIIVLFFLFFLVKNPKHPSITMVD
VGQGDSILLQDRWNSQNILIDTGGRLKIRADEQWKEGIYKSNAESTLLPYLRASGVSKVDVLIVTHPDEDHIGDLESVAQ
KVPIKNIYVSASALEKKNFVKKLSSLKSQIHIVQEGDKLPIFNSYLRFLTTGGEGKSDNDNSLVTFGEFYGKKFLFTGDL
EEEGEVKLQKEYPHLEVDILKVGHHGSKTSTKEGFLEAIKPKVALISAGKNNRYKHPSQETLHQLTARGIKIYRTDQQGA
IRFLYKKGTWQIQTVK

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=399186 GIG89_RS02260 WP_153924542.1 463829..466039(+) (comEC) [Lactococcus petauri strain CF11]
ATGAAACAAAAATTTACGCTTATCTATTTAGTCTATCTCTTAGTTTTTGTTTATTTTCTTATTTTCAGTTTTTCATGGCC
TTTACTTATTCTTAGTTTGTTTAGTCTCTTCATCGCTTTTTATCGTCAATACTATAGTTTGTTAGCTCTTTTACTGTGCT
TTAGTTTCTTCTTACTCATGGTAAAAAAAGAGACAGAAGTACAAGAAATACAACAACCAGAAAAAATTTCGAAGATTACC
CCTTATATGGATACTCTTCAAGTGAATGGAAATAGGCTCAGTTTCAGGGGAGAAGTGAACGGAAGAGATTTTCAAGCTTT
TTACACATTGACTTCGGAAAAAGAAAAAGAATACTTTAAAAATCTTAGGATAAAGGGGATTTTTTACATTGAAGGCACTT
TAGATATCCCAGAAGAGCAAAGAAACTTTTCAAGTTTTGATTACAGAAAGTATTTAAGAACGCAAGGTATTTACCGACTT
CTTAAAATAGAAAAAATTGAAGGATTTGAAGAAAAACATGACTTTGATTTACGGCTGGTACGCCGAAAAGCCATTCTTTG
GACACAAGAACATTTTCCTTCTCCCATGTCGTCCTATATGACAGGGCTTCTTTTTGGTTGGTTGGATAAAGACTTTGAAG
AAATGGGGGAGCTTTATACTAGCCTCGGTATTATCCATTTATTTGCCCTGTCAGGGATGCAGGTGAATTTTTTTATTGAA
CTTCTTCGAAATATTTTATTAAGGCTAGGTTTATCAAGAAAGTTGGTCTATTTTATCCAAATTCCCTTTTCGATATTTTA
TGCTTTTCTTACTGGCTTATCTCTCTCAATCTTACGTGCGCTTCTTCAAAAAAATATACCTATTAAAAATTCAAGCGATA
GATTTTCTATCACTTTTCTTCTTTTAATGATATTCAGTCCATATTTCCTACTGACAACAGGAGGACAACTGACGATGCTC
TATTCTTTCTTAATCACATTTTTTTCACAAAAATTCAATGAACTAAAAGGATTAAAAAGAGCATTACTTGATTCTACTGT
TCTAGCTGTTGGGGTACTTCCGCTTTTGATTTTTCACTTCCATTCTTTCCAACCATTATCGATTATATTGACTTTATTAT
TTAGTCTGATTTTTGATTTTTTACTTTTGCCAGGTTTACTTTTTGTCTTTCTCCTTTCTTTAGTCGGCATTGATCTTACA
TTACTTAATCCTTTTTTTATTATTTTAGAATCAATAGTAAGACTGGTTGGCAGTTTATTTGATAAACCGATTGTATTTGG
CAAACCAAATCTTATTTTTTTACTTTTGCTTTTTATGCTAAGTGGACTTGCACTCGATTTTTACAGAAAAAGAAACTGGA
ACTTAGTTGTAATAATTGTTCTTTTCTTTCTTTTTTTCCTTGTTAAGAATCCTAAACACCCAAGCATTACAATGGTAGAT
GTGGGCCAAGGAGACAGTATTCTCTTGCAAGACAGGTGGAACAGTCAAAATATCTTAATTGATACTGGCGGTAGATTAAA
AATAAGAGCTGATGAGCAGTGGAAGGAGGGAATTTATAAGAGCAATGCTGAAAGTACACTTCTACCTTATCTGAGAGCGA
GTGGAGTGAGCAAAGTAGATGTTCTGATTGTGACACATCCAGATGAGGATCATATTGGTGACTTGGAGAGTGTAGCTCAG
AAAGTACCAATAAAAAATATTTATGTCTCAGCTAGTGCATTAGAGAAGAAAAATTTTGTTAAAAAACTAAGCAGCTTAAA
AAGTCAGATTCACATTGTGCAAGAGGGAGACAAGCTCCCCATATTTAACAGTTATCTCCGGTTTCTAACGACAGGAGGTG
AAGGAAAAAGCGATAATGATAATTCTTTAGTAACGTTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGTGACTTA
GAAGAAGAGGGAGAGGTTAAACTCCAGAAAGAATATCCACATTTAGAGGTTGATATCCTAAAAGTTGGACATCATGGCAG
TAAGACTTCTACAAAGGAAGGTTTTTTAGAAGCGATTAAGCCTAAGGTTGCTCTTATTTCTGCTGGAAAGAATAATCGAT
ATAAACATCCGAGTCAAGAAACGCTTCACCAATTAACTGCACGAGGAATAAAAATTTATCGGACAGACCAGCAAGGAGCA
ATCCGTTTCCTTTATAAAAAAGGCACTTGGCAAATTCAAACAGTAAAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(481-689)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(203-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

52.66

99.592

0.524
  comEC/celB Streptococcus mitis SK321

45.101

100

0.457
  comEC/celB Streptococcus pneumoniae TIGR4

43.876

100

0.443
  comEC/celB Streptococcus mitis NCTC 12261

43.801

100

0.442
  comEC/celB Streptococcus pneumoniae Rx1

43.472

100

0.439
  comEC/celB Streptococcus pneumoniae D39

43.472

100

0.439
  comEC/celB Streptococcus pneumoniae R6

43.472

100

0.439

Multiple sequence alignment