Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   APZ19_RS11955 Genome accession   NZ_CP045859
Coordinates   2539750..2542008 (-) Length   752 a.a.
NCBI ID   WP_054822859.1    Uniprot ID   -
Organism   Vibrio owensii strain SH14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2534750..2547008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS11935 (APZ19_11935) kdsB 2536036..2536794 (-) 759 WP_039986001.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  APZ19_RS11940 (APZ19_11940) - 2536794..2536973 (-) 180 WP_005378451.1 Trm112 family protein -
  APZ19_RS11945 (APZ19_11945) lpxK 2536954..2537961 (-) 1008 WP_054822857.1 tetraacyldisaccharide 4'-kinase -
  APZ19_RS11950 (APZ19_11950) msbA 2537967..2539718 (-) 1752 WP_054822858.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  APZ19_RS11955 (APZ19_11955) comEC 2539750..2542008 (-) 2259 WP_054822859.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  APZ19_RS11960 (APZ19_11960) - 2542017..2542526 (+) 510 WP_009707126.1 DUF2062 domain-containing protein -
  APZ19_RS11965 (APZ19_11965) lolE 2542695..2543939 (-) 1245 WP_027726601.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  APZ19_RS11970 (APZ19_11970) lolD 2543942..2544649 (-) 708 WP_005437497.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  APZ19_RS11975 (APZ19_11975) lolC 2544642..2545850 (-) 1209 WP_032802943.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  APZ19_RS11980 (APZ19_11980) - 2546115..2546684 (+) 570 WP_045412803.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84184.43 Da        Isoelectric Point: 7.6341

>NTDB_id=398762 APZ19_RS11955 WP_054822859.1 2539750..2542008(-) (comEC) [Vibrio owensii strain SH14]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIAIGSIIKLRRGLLSIGAIWGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIAQIEQVNSQKLLPFLKPKIRLITAFPLAVNSEFTTQVTMKPILGLKNEAGYDAEKQAA
GKGIVARAVVISDATWVIRTQTSIRQQIIATTNEHISELKHFPLISALAFSDRSLLTQSDWGALRDSGLLHLVSISGLHI
GMAFAFGMSVGLVVRYGLPSYAFLPPLFGLITALAYAWLANFSLPTTRAFSVCAIYLLLKFSLVYWSPWRVLLLAVSIQL
CLEPFAPLNISFWLSYLSVVAVLLAVNVVQQAQEHWIAKLTAILKVQLVLTMLIVPISGVFFSGTSLSSIVYNLIFIPWF
GFIVVPLMFIALIATPLSDYIAALLWQCLDWMLWPLSWSLQFAEGSWYSMSIEMTLLVIAITCAFIGARFLTKGAMAILL
LVIVFVALFHERQFGRWRIDVLDVGHGLAVLIEKEGEVFLYDTGKAWNTGSIAQQVVSPVLHRRGFRSVDVLIVSHADSD
HAGGRDYIEEHFSPKTKFSSQHYFDYQSCIAGEKWTWQALKFEVLWPPKQVNRAYNPHSCVIRVVDTESDFKLLLTGDIE
AISEWILVREPDKLESDLMLVPHHGSKSSSNPKFVEAVSPQLAIASLAKANQWGMPADKVIHAYEKANAHWLDTGTSGQV
SVFIDQDNWYFETKRSETIEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=398762 APZ19_RS11955 WP_054822859.1 2539750..2542008(-) (comEC) [Vibrio owensii strain SH14]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCAAGCGTTATCTCGTCTGCGTGGTGGCCGACGATGCC
AGATTGGCGATGGTTGCTGCTGGGAATAATTGCCATTGGCTCGATAATCAAATTACGGCGTGGCTTATTGAGCATAGGCG
CAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATTGAACA
GGTTAATTCTCAAAAGCTGTTACCTTTTCTTAAACCAAAAATCCGATTGATAACCGCATTCCCTCTGGCTGTTAACAGTG
AATTTACCACTCAAGTCACGATGAAACCCATTTTGGGTCTGAAGAATGAAGCTGGGTACGATGCAGAGAAACAAGCTGCT
GGAAAAGGTATCGTTGCAAGGGCGGTAGTCATTTCTGATGCGACGTGGGTAATTCGCACACAAACTTCTATTCGTCAGCA
AATCATCGCGACCACCAATGAGCATATTTCAGAGCTTAAACATTTTCCTTTGATCAGTGCACTCGCCTTTAGTGACCGAT
CATTGCTTACTCAATCAGATTGGGGGGCTCTGAGAGACAGCGGCTTACTGCATTTGGTCTCGATATCCGGTTTGCACATA
GGCATGGCTTTTGCGTTTGGAATGAGTGTCGGACTTGTTGTTAGGTATGGGCTGCCCAGCTACGCCTTCCTCCCGCCATT
ATTTGGACTGATCACTGCTCTTGCTTATGCATGGTTAGCCAATTTCTCTTTACCTACAACTCGTGCGTTTTCTGTCTGCG
CCATTTATTTGTTGCTGAAATTTAGCTTGGTTTATTGGAGCCCATGGCGTGTGCTCTTACTTGCGGTTTCGATTCAGCTT
TGCTTAGAGCCGTTTGCACCTCTAAATATAAGCTTCTGGTTGTCTTACCTTTCTGTTGTCGCGGTATTGTTAGCCGTTAA
TGTTGTACAACAGGCTCAAGAGCATTGGATTGCTAAGTTAACAGCAATACTGAAAGTACAGTTAGTGCTTACTATGTTGA
TTGTTCCCATCAGTGGTGTGTTTTTCTCGGGAACCAGTTTGTCCTCCATCGTTTATAACCTCATTTTTATTCCCTGGTTT
GGTTTCATTGTTGTCCCTTTGATGTTTATTGCGCTCATCGCTACTCCGTTGTCTGACTATATCGCTGCTCTGCTATGGCA
ATGTTTAGATTGGATGCTTTGGCCTCTTAGTTGGTCATTGCAGTTCGCTGAAGGCAGTTGGTATTCCATGAGTATTGAGA
TGACGTTACTGGTTATTGCTATAACTTGCGCTTTCATCGGGGCGAGATTTCTAACCAAAGGGGCGATGGCTATTTTGCTG
CTTGTTATTGTTTTTGTCGCTTTATTTCATGAACGTCAATTTGGACGTTGGCGTATCGATGTGTTGGATGTAGGGCATGG
CTTGGCCGTTTTGATAGAGAAAGAGGGGGAGGTTTTTCTTTATGATACTGGGAAAGCGTGGAACACGGGCAGTATCGCTC
AGCAGGTTGTTTCGCCCGTTTTGCATCGCAGAGGCTTTCGTTCTGTCGATGTATTGATTGTGAGTCACGCAGACTCAGAC
CATGCTGGTGGTCGAGACTACATAGAGGAACATTTTTCTCCAAAAACAAAATTCAGCAGTCAGCATTACTTTGATTACCA
ATCATGTATTGCAGGAGAGAAATGGACTTGGCAGGCGCTTAAATTTGAAGTGCTGTGGCCGCCTAAGCAGGTAAACCGTG
CTTACAATCCTCATTCGTGTGTTATTCGAGTCGTCGATACAGAATCTGATTTTAAATTGCTTCTAACGGGGGACATCGAA
GCCATCAGCGAGTGGATACTGGTTCGTGAACCCGACAAGCTAGAGAGTGATTTGATGCTTGTGCCTCATCATGGCAGCAA
AAGTTCATCCAACCCTAAGTTTGTGGAAGCAGTTTCTCCCCAACTTGCCATCGCGTCTTTAGCTAAAGCCAATCAATGGG
GAATGCCTGCAGACAAGGTTATTCATGCTTATGAGAAGGCAAACGCACACTGGTTGGATACGGGGACAAGCGGTCAAGTG
TCGGTGTTCATAGATCAAGACAATTGGTATTTTGAAACCAAACGTAGCGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-680)

Competence protein (Competence)

(208-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

77.394

100

0.774
  comEC Vibrio parahaemolyticus RIMD 2210633

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

41.083

100

0.414

Multiple sequence alignment