Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   APZ19_RS10280 Genome accession   NZ_CP045859
Coordinates   2146659..2147246 (-) Length   195 a.a.
NCBI ID   WP_009705834.1    Uniprot ID   A0AAP9KAC0
Organism   Vibrio owensii strain SH14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2141659..2152246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS10260 (APZ19_10260) - 2141810..2143072 (-) 1263 WP_054822688.1 DUF945 family protein -
  APZ19_RS10265 (APZ19_10265) - 2143258..2145198 (+) 1941 WP_054822689.1 ATP-binding protein -
  APZ19_RS10270 (APZ19_10270) - 2145195..2145692 (+) 498 WP_054822690.1 response regulator -
  APZ19_RS10275 (APZ19_10275) - 2145899..2146447 (+) 549 WP_005442235.1 hypothetical protein -
  APZ19_RS10280 (APZ19_10280) tfoX 2146659..2147246 (-) 588 WP_009705834.1 TfoX/Sxy family DNA transformation protein Regulator
  APZ19_RS10290 (APZ19_10290) - 2147617..2148537 (+) 921 WP_009705833.1 HDOD domain-containing protein -
  APZ19_RS10295 (APZ19_10295) - 2148641..2149546 (+) 906 WP_045413660.1 lysine exporter LysO family protein -
  APZ19_RS10300 (APZ19_10300) - 2149755..2150267 (+) 513 WP_054822691.1 hypothetical protein -
  APZ19_RS10305 (APZ19_10305) panP 2150389..2152035 (+) 1647 WP_009705831.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22398.56 Da        Isoelectric Point: 5.3762

>NTDB_id=398759 APZ19_RS10280 WP_009705834.1 2146659..2147246(-) (tfoX) [Vibrio owensii strain SH14]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDDEFTQLNCEKYKHVKKQTTATVNYYDV
TDLFDSSFDGLDELLQKSIECSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=398759 APZ19_RS10280 WP_009705834.1 2146659..2147246(-) (tfoX) [Vibrio owensii strain SH14]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTTGGTGGTAT
TGGTTTATTCAGCAATGACGCAATGTTCGCGTTGGTAAGTAACGACTGTTGTTATTTACGCGGCGGAAATGGGTTGGATG
ATGAGTTTACTCAACTAAACTGCGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACCGTAAACTATTACGACGTA
ACAGATCTGTTTGATTCAAGCTTTGATGGACTTGACGAACTGTTACAAAAATCAATTGAATGTTCTATTAAGGAACGCAA
ATACCAAAAGTCTTCCGCCAGTAGACGTTTGCGCGATCTGCCAAATATGCAGTTAACGCTCGAACGCATGGTAAAGAAAG
CCGGCATTGATGATGTCGACACATTTTTAGAACTTGGACCGGTAGAAGTGTTCAACAAAGTCAGAGTCGCTTACGGCAGT
GACGTTGATGTGAAACTTCTATGGAAATTTGCTGGTGCGATCGATGGTATCCACTGGAAATTGATCCAAGAGCCACGCAA
AAAGCAATTGCTAGCGATGTGCGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

97.436

100

0.974
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.282

100

0.913
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.912

98.974

0.682
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.912

98.974

0.682
  tfoX Vibrio cholerae strain A1552

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

58.639

97.949

0.574

Multiple sequence alignment