Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | APZ19_RS01930 | Genome accession | NZ_CP045859 |
| Coordinates | 402156..402695 (+) | Length | 179 a.a. |
| NCBI ID | WP_005438106.1 | Uniprot ID | A0A0C1VQJ6 |
| Organism | Vibrio owensii strain SH14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 397156..407695
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APZ19_RS01915 (APZ19_01915) | uvrA | 397222..400044 (-) | 2823 | WP_054824617.1 | excinuclease ABC subunit UvrA | - |
| APZ19_RS01920 (APZ19_01920) | galU | 400183..401055 (-) | 873 | WP_038864585.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| APZ19_RS01925 (APZ19_01925) | qstR | 401218..401862 (-) | 645 | WP_005438104.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| APZ19_RS01930 (APZ19_01930) | ssb | 402156..402695 (+) | 540 | WP_005438106.1 | single-stranded DNA-binding protein | Machinery gene |
| APZ19_RS01935 (APZ19_01935) | csrD | 402943..404952 (+) | 2010 | WP_020195913.1 | RNase E specificity factor CsrD | - |
| APZ19_RS01940 (APZ19_01940) | - | 404964..406412 (+) | 1449 | WP_041060962.1 | MSHA biogenesis protein MshI | - |
| APZ19_RS01945 (APZ19_01945) | gspM | 406409..407059 (+) | 651 | WP_009707663.1 | type II secretion system protein GspM | - |
| APZ19_RS01950 (APZ19_01950) | - | 407052..407381 (+) | 330 | WP_009707662.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19888.94 Da Isoelectric Point: 4.9269
>NTDB_id=398742 APZ19_RS01930 WP_005438106.1 402156..402695(+) (ssb) [Vibrio owensii strain SH14]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=398742 APZ19_RS01930 WP_005438106.1 402156..402695(+) (ssb) [Vibrio owensii strain SH14]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCTCAGCAGCAGCAATACAATGCTCCTCAGCAACAACAACAGGCTCCGCAG
CAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGCCAGCCTCAACAGCCAGCTCAGCAGCAGCAATACAATGCTCCTCAGCAACAACAACAGGCTCCGCAG
CAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80 |
100 |
0.804 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.581 |
| ssb | Neisseria meningitidis MC58 |
46.927 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
46.927 |
100 |
0.469 |