Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   APZ19_RS01925 Genome accession   NZ_CP045859
Coordinates   401218..401862 (-) Length   214 a.a.
NCBI ID   WP_005438104.1    Uniprot ID   A0A0C1W6X8
Organism   Vibrio owensii strain SH14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 396218..406862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS01915 (APZ19_01915) uvrA 397222..400044 (-) 2823 WP_054824617.1 excinuclease ABC subunit UvrA -
  APZ19_RS01920 (APZ19_01920) galU 400183..401055 (-) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  APZ19_RS01925 (APZ19_01925) qstR 401218..401862 (-) 645 WP_005438104.1 LuxR C-terminal-related transcriptional regulator Regulator
  APZ19_RS01930 (APZ19_01930) ssb 402156..402695 (+) 540 WP_005438106.1 single-stranded DNA-binding protein Machinery gene
  APZ19_RS01935 (APZ19_01935) csrD 402943..404952 (+) 2010 WP_020195913.1 RNase E specificity factor CsrD -
  APZ19_RS01940 (APZ19_01940) - 404964..406412 (+) 1449 WP_041060962.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24566.44 Da        Isoelectric Point: 9.2283

>NTDB_id=398741 APZ19_RS01925 WP_005438104.1 401218..401862(-) (qstR) [Vibrio owensii strain SH14]
MKKSAYARKLFLISMEDDAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLTFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398741 APZ19_RS01925 WP_005438104.1 401218..401862(-) (qstR) [Vibrio owensii strain SH14]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCATGGAAGATGATGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAGTACACTGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TGTTGATCGACTTTAGTGAACACAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACC
GTGGTGTTCAATGTGCCTAAGCGTTTGACTACGGATGAATTGCTGACATTTGGGCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGGGAGGGTTTAAAAGAGATCGTAAACGGCCAGAACTGGTTACCTCGCAATGTGACTAGCC
AACTTCTCCATTATTATCGCAATGTCATCAGTACCCACACAGCACCAGCCACCGTCGATTTAACCATTCGTGAATTGCAA
GTCTTACGCTGCCTTCAAGCGGGTGCATCGAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTACCAAATTTTTAAGAAGCTTTCAGTGAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1W6X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

96.262

100

0.963
  qstR Vibrio parahaemolyticus RIMD 2210633

90.187

100

0.902
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment