Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GII23_RS06115 Genome accession   NZ_CP045858
Coordinates   1333738..1334226 (+) Length   162 a.a.
NCBI ID   WP_041110253.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain EC28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1328738..1339226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII23_RS06105 (GII23_06095) uvrA 1329229..1332069 (-) 2841 WP_165562714.1 excinuclease ABC subunit UvrA -
  GII23_RS06110 (GII23_06100) - 1332202..1333569 (+) 1368 WP_043222047.1 MFS transporter -
  GII23_RS06115 (GII23_06105) ssb 1333738..1334226 (+) 489 WP_041110253.1 single-stranded DNA-binding protein Machinery gene
  GII23_RS06120 (GII23_06110) - 1334236..1335120 (+) 885 WP_165562715.1 sugar nucleotide-binding protein -
  GII23_RS06125 (GII23_06115) - 1335113..1336042 (+) 930 WP_165562716.1 NAD-dependent epimerase/dehydratase family protein -
  GII23_RS06130 (GII23_06120) - 1336109..1336792 (-) 684 WP_165562717.1 OmpW family protein -
  GII23_RS06135 (GII23_06125) - 1336976..1337758 (+) 783 WP_165562718.1 DUF3450 domain-containing protein -
  GII23_RS06140 (GII23_06130) - 1337755..1339101 (+) 1347 WP_165562719.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18198.25 Da        Isoelectric Point: 5.9492

>NTDB_id=398710 GII23_RS06115 WP_041110253.1 1333738..1334226(+) (ssb) [Stutzerimonas balearica strain EC28]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGSRGGSSDDAPRQPRPQREPQQAPRQQAQPQRQAAPQPAPDYDSFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=398710 GII23_RS06115 WP_041110253.1 1333738..1334226(+) (ssb) [Stutzerimonas balearica strain EC28]
ATGGCCAGAGGGGTGAATAAGGTCATCTTGATCGGCAACGTGGGCGGTGATCCCGAGACCCGCTATCTGCCCAATGGCAA
CGCGGTGACCAACATCACGCTTGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGCCAGCTCCAGGAACGCACCGAAT
GGCACCGTGTCGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAG
GGCCGTCTGCAGACCCGTGAATGGGAAAAGGACGGCGTCAAGCGCTACACCACCGAAATCGTGGTGGACATGAATGGCAC
CATGCAGTTGCTCGGCAGCCGCGGCGGCTCCTCCGACGACGCGCCGCGCCAGCCGCGGCCGCAGCGTGAGCCCCAGCAGG
CTCCGCGTCAGCAGGCCCAGCCGCAGCGCCAGGCCGCTCCGCAGCCTGCGCCGGACTATGACAGCTTCGATGATGACATC
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.818

100

0.617
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.506
  ssb Neisseria meningitidis MC58

45

100

0.5
  ssb Glaesserella parasuis strain SC1401

44.199

100

0.494

Multiple sequence alignment