Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GH983_RS08940 Genome accession   NZ_CP045854
Coordinates   1825018..1825563 (-) Length   181 a.a.
NCBI ID   WP_069041360.1    Uniprot ID   A0AAI8D6F3
Organism   Agrobacterium sp. MA01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1820018..1830563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH983_RS08920 (GH983_08920) - 1820508..1820666 (+) 159 WP_153762198.1 hypothetical protein -
  GH983_RS08925 (GH983_08925) - 1820750..1820902 (+) 153 WP_153762199.1 hypothetical protein -
  GH983_RS24470 - 1820962..1821096 (+) 135 WP_256367283.1 hypothetical protein -
  GH983_RS08930 (GH983_08930) gyrA 1821268..1824069 (-) 2802 WP_153762200.1 DNA gyrase subunit A -
  GH983_RS08935 (GH983_08935) - 1824265..1824894 (+) 630 WP_054148128.1 MarC family protein -
  GH983_RS08940 (GH983_08940) ssb 1825018..1825563 (-) 546 WP_069041360.1 single-stranded DNA-binding protein Machinery gene
  GH983_RS08945 (GH983_08945) uvrA 1825832..1828753 (+) 2922 WP_153762201.1 excinuclease ABC subunit UvrA -
  GH983_RS08950 (GH983_08950) - 1828850..1829653 (+) 804 WP_153762202.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18839.56 Da        Isoelectric Point: 5.9441

>NTDB_id=398675 GH983_RS08940 WP_069041360.1 1825018..1825563(-) (ssb) [Agrobacterium sp. MA01]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDKNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGSTVYI
EGQLQTRKWQDQSGADRYSTEVVLQGFSGNLTMLGGRGDGGGASRGGNDFGGADYGGGGGGYDGGYGSPAPSRGGASGGA
SRGGSAPSGGFSRDLDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=398675 GH983_RS08940 WP_069041360.1 1825018..1825563(-) (ssb) [Agrobacterium sp. MA01]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGATCGGCAATCTCGGTGCCGATCCCGAAATTCGCCGGACCCAGGACGGCCG
GCCGATCGCCAACCTGCGCATCGCGACCTCGGAAACCTGGCGCGACAAGAACAGCGGCGAACGCAAGGAAAAGACCGAAT
GGCATTCGGTCGTGATCTTCAATGAAGGCCTCTGCAAGGTTGCCGAACAGTATCTGAAGAAGGGCTCGACCGTTTACATC
GAGGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGAGCGGCGCGGACCGTTACTCGACGGAAGTCGTGCTGCAGGGCTT
CAGCGGCAACCTGACCATGCTTGGCGGTCGCGGTGATGGCGGCGGCGCCTCGCGTGGCGGCAATGACTTTGGGGGTGCCG
ATTACGGCGGCGGCGGCGGTGGCTACGACGGCGGCTACGGTTCGCCTGCACCTTCGCGTGGCGGCGCCTCCGGTGGCGCA
AGCCGAGGTGGCAGCGCCCCTTCCGGCGGCTTCTCCCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.494

98.343

0.536
  ssb Glaesserella parasuis strain SC1401

45.503

100

0.475
  ssb Neisseria gonorrhoeae MS11

40.426

100

0.42
  ssb Neisseria meningitidis MC58

40.426

100

0.42

Multiple sequence alignment