Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GHC22_RS21720 Genome accession   NZ_CP045837
Coordinates   4567973..4568497 (-) Length   174 a.a.
NCBI ID   WP_153753888.1    Uniprot ID   -
Organism   Citrobacter sp. H12-3-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4562973..4573497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHC22_RS21700 soxR 4564616..4565074 (-) 459 WP_153753887.1 redox-sensitive transcriptional activator SoxR -
  GHC22_RS21705 soxS 4565161..4565484 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  GHC22_RS21710 - 4565487..4567073 (-) 1587 WP_048236344.1 EAL domain-containing protein -
  GHC22_RS21715 - 4567625..4567906 (+) 282 WP_003826625.1 YjcB family protein -
  GHC22_RS21720 ssb 4567973..4568497 (-) 525 WP_153753888.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GHC22_RS21725 uvrA 4568749..4571571 (+) 2823 WP_153753889.1 excinuclease ABC subunit UvrA -
  GHC22_RS21730 - 4572058..4572201 (+) 144 WP_153753890.1 hypothetical protein -
  GHC22_RS21735 - 4572249..4572605 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -
  GHC22_RS21740 aphA 4572733..4573446 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18606.69 Da        Isoelectric Point: 5.2456

>NTDB_id=398573 GHC22_RS21720 WP_153753888.1 4567973..4568497(-) (ssb) [Citrobacter sp. H12-3-2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPLQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=398573 GHC22_RS21720 WP_153753888.1 4567973..4568497(-) (ssb) [Citrobacter sp. H12-3-2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCTGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAACAGTCAGCTCCGGCAGCACCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.77
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5

Multiple sequence alignment