Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GII77_RS21365 Genome accession   NZ_CP045825
Coordinates   4139348..4139866 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain 75     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4134348..4144866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS21335 (GII77_21335) yyaJ 4134852..4136207 (+) 1356 WP_015250786.1 MFS transporter -
  GII77_RS21340 (GII77_21340) maa 4136241..4136795 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  GII77_RS21345 (GII77_21345) yyaH 4136811..4137191 (-) 381 WP_015250784.1 VOC family protein -
  GII77_RS21350 (GII77_21350) ccpB 4137247..4138182 (-) 936 WP_015250783.1 transcriptional regulator CcpB -
  GII77_RS21355 (GII77_21355) xth 4138241..4138999 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  GII77_RS21360 (GII77_21360) rpsR 4139065..4139304 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  GII77_RS21365 (GII77_21365) ssbA 4139348..4139866 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GII77_RS21370 (GII77_21370) rpsF 4139907..4140194 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  GII77_RS21375 (GII77_21375) ychF 4140305..4141405 (-) 1101 WP_015250781.1 redox-regulated ATPase YchF -
  GII77_RS21380 (GII77_21380) yyaE 4141532..4143535 (-) 2004 WP_044052400.1 molybdopterin-dependent oxidoreductase -
  GII77_RS21385 (GII77_21385) yyzM 4143586..4143792 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=398343 GII77_RS21365 WP_003219228.1 4139348..4139866(-) (ssbA) [Bacillus subtilis strain 75]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=398343 GII77_RS21365 WP_003219228.1 4139348..4139866(-) (ssbA) [Bacillus subtilis strain 75]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment