Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GII81_RS22120 Genome accession   NZ_CP045820
Coordinates   4246810..4247328 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain MB9_B1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4231064..4247656 4246810..4247328 within 0


Gene organization within MGE regions


Location: 4231064..4247656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII81_RS22015 (GII81_22015) yyaQ 4231064..4231420 (+) 357 WP_029726097.1 MmcQ/YjbR family DNA-binding protein -
  GII81_RS22020 (GII81_22020) yyaP 4231580..4232146 (+) 567 WP_029726096.1 dihydrofolate reductase family protein -
  GII81_RS22025 (GII81_22025) - 4232405..4232555 (+) 151 Protein_4316 DUF255 domain-containing protein -
  GII81_RS22030 (GII81_22030) tet(L) 4232658..4234034 (-) 1377 WP_029726095.1 tetracycline efflux MFS transporter Tet(L) -
  GII81_RS22610 (GII81_22035) - 4234068..4234250 (-) 183 WP_110109553.1 tetracycline resistance efflux system leader peptide -
  GII81_RS22040 (GII81_22040) - 4234384..4234554 (+) 171 Protein_4319 DUF255 domain-containing protein -
  GII81_RS22045 (GII81_22045) - 4234622..4235098 (-) 477 WP_050496387.1 DUF4944 domain-containing protein -
  GII81_RS22050 (GII81_22050) - 4235236..4236210 (+) 975 WP_029726093.1 amidase domain-containing protein -
  GII81_RS22055 (GII81_22055) yyaN 4236480..4236896 (+) 417 WP_010886646.1 MerR family transcriptional regulator -
  GII81_RS22060 (GII81_22060) yyaM 4236893..4237810 (+) 918 WP_029726092.1 EamA family transporter -
  GII81_RS22065 (GII81_22065) - 4237882..4238050 (+) 169 Protein_4324 DUF255 domain-containing protein -
  GII81_RS22070 (GII81_22070) - 4238110..4238745 (-) 636 WP_029726091.1 LysE family translocator -
  GII81_RS22080 (GII81_22080) yyaL 4239103..4241191 (+) 2089 Protein_4326 thioredoxin domain-containing protein -
  GII81_RS22085 (GII81_22085) yyaK 4241188..4242087 (-) 900 WP_015250787.1 type II CAAX endopeptidase family protein -
  GII81_RS22090 (GII81_22090) yyaJ 4242313..4243668 (+) 1356 WP_048654832.1 MFS transporter -
  GII81_RS22095 (GII81_22095) maa 4243702..4244256 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  GII81_RS22100 (GII81_22100) yyaH 4244274..4244654 (-) 381 WP_048654831.1 VOC family protein -
  GII81_RS22105 (GII81_22105) ccpB 4244710..4245645 (-) 936 WP_153912460.1 transcriptional regulator CcpB -
  GII81_RS22110 (GII81_22110) xth 4245704..4246462 (-) 759 WP_038429969.1 exodeoxyribonuclease III -
  GII81_RS22115 (GII81_22115) rpsR 4246527..4246766 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  GII81_RS22120 (GII81_22120) ssbA 4246810..4247328 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GII81_RS22125 (GII81_22125) rpsF 4247369..4247656 (-) 288 WP_003244064.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=398018 GII81_RS22120 WP_003219228.1 4246810..4247328(-) (ssbA) [Bacillus subtilis strain MB9_B1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=398018 GII81_RS22120 WP_003219228.1 4246810..4247328(-) (ssbA) [Bacillus subtilis strain MB9_B1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment