Detailed information NTG0397985

Bioinformatically predicted

Overview

• Name: crp
• Type: Regulator
• Locus tag: HQ939_RS02130
• Genome accession: NZ_CP054198
• Coordinates: 338670..339344 (-)
• Length: 224 a.a.
• NCBI ID: WP_021111230.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain YHP170504
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Genomic Context

Location: 333670..344344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ939_RS02105 (HQ939_02105)	lolB	334021..334653 (+)	633	WP_021110345.1	lipoprotein insertase outer membrane protein LolB	-
HQ939_RS02110 (HQ939_02110)	ispE	334655..335500 (+)	846	WP_075606354.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
HQ939_RS02115 (HQ939_02115)	-	335528..336478 (+)	951	WP_005713153.1	ribose-phosphate pyrophosphokinase	-
HQ939_RS02120 (HQ939_02120)	pyrD	336850..337857 (+)	1008	WP_021111227.1	quinone-dependent dihydroorotate dehydrogenase	-
HQ939_RS02125 (HQ939_02125)	-	337978..338160 (-)	183	WP_075606356.1	hypothetical protein	-
HQ939_RS02130 (HQ939_02135)	crp	338670..339344 (-)	675	WP_021111230.1	cAMP-activated global transcriptional regulator CRP	Regulator
HQ939_RS02135 (HQ939_02140)	-	339411..339635 (-)	225	WP_005713165.1	YheU family protein	-
HQ939_RS02140 (HQ939_02145)	slmA	339643..340248 (-)	606	WP_021114417.1	nucleoid occlusion factor SlmA	-
HQ939_RS02145 (HQ939_02150)	dut	340257..340712 (-)	456	WP_021119359.1	dUTP diphosphatase	-
HQ939_RS02150 (HQ939_02155)	coaBC	340709..341914 (-)	1206	WP_042906614.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
HQ939_RS02155 (HQ939_02160)	radC	342084..342800 (+)	717	WP_075606357.1	RadC family protein	Machinery gene
HQ939_RS02160 (HQ939_02165)	rpmB	342926..343162 (+)	237	WP_006251446.1	50S ribosomal protein L28	-
HQ939_RS02165 (HQ939_02170)	rpmG	343174..343344 (+)	171	WP_005624479.1	50S ribosomal protein L33	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25169.13 Da
• Isoelectric Point: 6.8374

>NTDB_id=397985 HQ939_RS02130 WP_021111230.1 338670..339344(-) (crp) [Glaesserella parasuis strain YHP170504]
MQDVSISTAQLEDVSPLPSIHDPAVEWFLTNCHIHRYPAKYTLIHAGEDAESLFYIVSGAVSVFIKDEEGKEMLLTNLGQ
GEFVGEISLFEEKAQPRTAWVRTKGNCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRMTSRQVSNLAFLDVTGRIAQ
TLMNLAKMPDAMTHPQGMQIKITRQEIGQMVGCSRETVGRILKMLEDEGLISAHGKTIVVYGTR

Nucleotide

• Length: 675 bp

>NTDB_id=397985 HQ939_RS02130 WP_021111230.1 338670..339344(-) (crp) [Glaesserella parasuis strain YHP170504]
ATGCAAGATGTTTCAATCTCAACCGCACAGCTTGAAGATGTCAGCCCATTACCATCCATTCACGATCCTGCGGTGGAATG
GTTTTTAACTAACTGTCATATTCATCGTTATCCAGCAAAATATACTTTAATTCACGCAGGTGAAGATGCTGAATCACTGT
TTTATATTGTCAGCGGAGCTGTGTCTGTCTTTATCAAGGATGAAGAAGGCAAGGAGATGTTATTAACCAATTTAGGCCAA
GGCGAATTTGTCGGTGAAATCAGCCTTTTTGAAGAAAAGGCTCAGCCTCGCACTGCTTGGGTAAGAACTAAAGGTAACTG
TGAAATTGCTGAAATTTCTTATAAAAAATTCAAGCAATTAGTGCATCTTAATCCAGATATTTTGATGTATTTATCCGCAC
AGATGGCTCGCCGTTTACGAATGACATCAAGACAGGTTAGTAACCTAGCATTTCTTGATGTAACAGGTCGTATTGCTCAA
ACATTGATGAATTTAGCTAAAATGCCTGATGCGATGACTCACCCTCAGGGTATGCAGATTAAAATTACTCGCCAAGAAAT
TGGTCAAATGGTTGGTTGCTCACGAGAAACTGTAGGTCGTATTTTGAAAATGCTTGAGGATGAAGGGTTAATTTCTGCAC
ATGGTAAAACTATCGTGGTGTATGGGACAAGATAA

Domains

Predicted by InterProScan.

• Crp-like helix-turn-helix domain (HTH_Crp_2) (156-220)

• Cyclic nucleotide-binding domain (cNMP_binding) (35-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
crp	Vibrio cholerae strain A1552	75.369	90.625	0.683
crp	Haemophilus influenzae Rd KW20	72.906	90.625	0.661
crp	Acinetobacter baumannii D1279779	48	89.286	0.429