Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HQ939_RS02155 Genome accession   NZ_CP054198
Coordinates   342084..342800 (+) Length   238 a.a.
NCBI ID   WP_075606357.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337084..347800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS02125 (HQ939_02125) - 337978..338160 (-) 183 WP_075606356.1 hypothetical protein -
  HQ939_RS02130 (HQ939_02135) crp 338670..339344 (-) 675 WP_021111230.1 cAMP-activated global transcriptional regulator CRP Regulator
  HQ939_RS02135 (HQ939_02140) - 339411..339635 (-) 225 WP_005713165.1 YheU family protein -
  HQ939_RS02140 (HQ939_02145) slmA 339643..340248 (-) 606 WP_021114417.1 nucleoid occlusion factor SlmA -
  HQ939_RS02145 (HQ939_02150) dut 340257..340712 (-) 456 WP_021119359.1 dUTP diphosphatase -
  HQ939_RS02150 (HQ939_02155) coaBC 340709..341914 (-) 1206 WP_042906614.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  HQ939_RS02155 (HQ939_02160) radC 342084..342800 (+) 717 WP_075606357.1 RadC family protein Machinery gene
  HQ939_RS02160 (HQ939_02165) rpmB 342926..343162 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  HQ939_RS02165 (HQ939_02170) rpmG 343174..343344 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  HQ939_RS02170 (HQ939_02175) - 343499..345460 (+) 1962 WP_075606358.1 TonB-dependent receptor domain-containing protein -
  HQ939_RS02175 (HQ939_02180) - 345629..345994 (+) 366 WP_021110352.1 YgiW/YdeI family stress tolerance OB fold protein -
  HQ939_RS02180 (HQ939_02185) ciaR 346055..346726 (+) 672 WP_021111236.1 response regulator Regulator

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27306.46 Da        Isoelectric Point: 4.6746

>NTDB_id=397986 HQ939_RS02155 WP_075606357.1 342084..342800(+) (radC) [Glaesserella parasuis strain YHP170504]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKLNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCDPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=397986 HQ939_RS02155 WP_075606357.1 342084..342800(+) (radC) [Glaesserella parasuis strain YHP170504]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATCTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAACTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGAGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCCGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTGATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

61.111

90.756

0.555

Multiple sequence alignment