Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   HQ939_RS02180 Genome accession   NZ_CP054198
Coordinates   346055..346726 (+) Length   223 a.a.
NCBI ID   WP_021111236.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP170504     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 341055..351726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS02155 (HQ939_02160) radC 342084..342800 (+) 717 WP_075606357.1 RadC family protein Machinery gene
  HQ939_RS02160 (HQ939_02165) rpmB 342926..343162 (+) 237 WP_006251446.1 50S ribosomal protein L28 -
  HQ939_RS02165 (HQ939_02170) rpmG 343174..343344 (+) 171 WP_005624479.1 50S ribosomal protein L33 -
  HQ939_RS02170 (HQ939_02175) - 343499..345460 (+) 1962 WP_075606358.1 TonB-dependent receptor domain-containing protein -
  HQ939_RS02175 (HQ939_02180) - 345629..345994 (+) 366 WP_021110352.1 YgiW/YdeI family stress tolerance OB fold protein -
  HQ939_RS02180 (HQ939_02185) ciaR 346055..346726 (+) 672 WP_021111236.1 response regulator Regulator
  HQ939_RS02185 (HQ939_02190) qseC 346713..348113 (+) 1401 WP_075606359.1 quorum sensing histidine kinase QseC -
  HQ939_RS02190 (HQ939_02195) - 348211..348297 (+) 87 Protein_371 helix-turn-helix domain-containing protein -
  HQ939_RS02195 (HQ939_02200) - 348503..348790 (+) 288 WP_075606360.1 co-chaperone GroES -
  HQ939_RS02200 (HQ939_02205) groL 348901..350544 (+) 1644 WP_021111239.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25454.15 Da        Isoelectric Point: 6.0355

>NTDB_id=397987 HQ939_RS02180 WP_021111236.1 346055..346726(+) (ciaR) [Glaesserella parasuis strain YHP170504]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=397987 HQ939_RS02180 WP_021111236.1 346055..346726(+) (ciaR) [Glaesserella parasuis strain YHP170504]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTCACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTACAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363

Multiple sequence alignment