Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GII82_RS12345 Genome accession   NZ_CP045819
Coordinates   2423139..2423474 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain MB9_B4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2418139..2428474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII82_RS12325 (GII82_12325) gcvT 2418732..2419820 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  GII82_RS12330 (GII82_12330) hepAA 2420261..2421934 (+) 1674 WP_029726726.1 SNF2-related protein -
  GII82_RS12335 (GII82_12335) yqhG 2421955..2422749 (+) 795 WP_015714249.1 YqhG family protein -
  GII82_RS12340 (GII82_12340) sinI 2422932..2423105 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  GII82_RS12345 (GII82_12345) sinR 2423139..2423474 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  GII82_RS12350 (GII82_12350) tasA 2423567..2424352 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GII82_RS12355 (GII82_12355) sipW 2424416..2424988 (-) 573 WP_072692741.1 signal peptidase I SipW -
  GII82_RS12360 (GII82_12360) tapA 2424972..2425733 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  GII82_RS12365 (GII82_12365) yqzG 2426005..2426331 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII82_RS12370 (GII82_12370) spoIITA 2426373..2426552 (-) 180 WP_029726723.1 YqzE family protein -
  GII82_RS12375 (GII82_12375) comGG 2426624..2426998 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  GII82_RS12380 (GII82_12380) comGF 2426999..2427382 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  GII82_RS12385 (GII82_12385) comGE 2427408..2427755 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  GII82_RS12390 (GII82_12390) comGD 2427739..2428170 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  GII82_RS12395 (GII82_12395) comGC 2428160..2428456 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=397900 GII82_RS12345 WP_003226345.1 2423139..2423474(+) (sinR) [Bacillus subtilis strain MB9_B4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=397900 GII82_RS12345 WP_003226345.1 2423139..2423474(+) (sinR) [Bacillus subtilis strain MB9_B4]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment