Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSN5_RS11525 Genome accession   NC_014976
Coordinates   2195314..2195832 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis BSn5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2190314..2200832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS11495 (BSn5_11440) yyaJ 2190818..2192173 (+) 1356 WP_003226851.1 MFS transporter -
  BSN5_RS11500 (BSn5_11445) maa 2192207..2192761 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  BSN5_RS11505 (BSn5_11450) yyaH 2192777..2193157 (-) 381 WP_015715075.1 VOC family protein -
  BSN5_RS11510 (BSn5_11455) ccpB 2193213..2194148 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  BSN5_RS11515 (BSn5_11460) xth 2194208..2194966 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  BSN5_RS11520 (BSn5_11465) rpsR 2195031..2195270 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BSN5_RS11525 (BSn5_11470) ssbA 2195314..2195832 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BSN5_RS11530 (BSn5_11475) rpsF 2195873..2196160 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BSN5_RS11535 (BSn5_11480) ychF 2196271..2197371 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BSN5_RS11540 (BSn5_11485) yyaE 2197498..2199501 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  BSN5_RS11545 (BSn5_11490) yyzM 2199552..2199758 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=39775 BSN5_RS11525 WP_003219228.1 2195314..2195832(-) (ssbA) [Bacillus subtilis BSn5]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=39775 BSN5_RS11525 WP_003219228.1 2195314..2195832(-) (ssbA) [Bacillus subtilis BSn5]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment