Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GII86_RS21745 Genome accession   NZ_CP045816
Coordinates   4086194..4086712 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain P5_B2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4081194..4091712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS21715 (GII86_21715) yyaJ 4081698..4083053 (+) 1356 WP_015250786.1 MFS transporter -
  GII86_RS21720 (GII86_21720) maa 4083087..4083641 (-) 555 WP_046161083.1 sugar O-acetyltransferase -
  GII86_RS21725 (GII86_21725) yyaH 4083659..4084039 (-) 381 WP_003244460.1 VOC family protein -
  GII86_RS21730 (GII86_21730) ccpB 4084095..4085030 (-) 936 WP_046161084.1 transcriptional regulator CcpB -
  GII86_RS21735 (GII86_21735) xth 4085089..4085847 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  GII86_RS21740 (GII86_21740) rpsR 4085911..4086150 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  GII86_RS21745 (GII86_21745) ssbA 4086194..4086712 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GII86_RS21750 (GII86_21750) rpsF 4086753..4087040 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  GII86_RS21755 (GII86_21755) ychF 4087151..4088251 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  GII86_RS21760 (GII86_21760) yyaE 4088378..4090381 (-) 2004 WP_046161085.1 molybdopterin-dependent oxidoreductase -
  GII86_RS21765 (GII86_21765) yyzM 4090432..4090638 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=397699 GII86_RS21745 WP_003219228.1 4086194..4086712(-) (ssbA) [Bacillus subtilis strain P5_B2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=397699 GII86_RS21745 WP_003219228.1 4086194..4086712(-) (ssbA) [Bacillus subtilis strain P5_B2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment