Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GII86_RS12655 Genome accession   NZ_CP045816
Coordinates   2374361..2374657 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain P5_B2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369361..2379657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS12610 (GII86_12610) tasA 2369767..2370552 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GII86_RS12615 (GII86_12615) sipW 2370617..2371189 (-) 573 WP_003230181.1 signal peptidase I SipW -
  GII86_RS12620 (GII86_12620) tapA 2371173..2371934 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  GII86_RS12625 (GII86_12625) yqzG 2372206..2372532 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GII86_RS12630 (GII86_12630) spoIITA 2372574..2372753 (-) 180 WP_029726723.1 YqzE family protein -
  GII86_RS12635 (GII86_12635) comGG 2372825..2373199 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  GII86_RS12640 (GII86_12640) comGF 2373200..2373583 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  GII86_RS12645 (GII86_12645) comGE 2373609..2373956 (-) 348 WP_046160583.1 ComG operon protein 5 Machinery gene
  GII86_RS12650 (GII86_12650) comGD 2373940..2374371 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  GII86_RS12655 (GII86_12655) comGC 2374361..2374657 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  GII86_RS12660 (GII86_12660) comGB 2374671..2375708 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  GII86_RS12665 (GII86_12665) comGA 2375695..2376765 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  GII86_RS12670 (GII86_12670) - 2376977..2377174 (-) 198 WP_046160584.1 CBS domain-containing protein -
  GII86_RS12675 (GII86_12675) corA 2377176..2378129 (-) 954 WP_046160585.1 magnesium transporter CorA -
  GII86_RS12680 (GII86_12680) yqhB 2378272..2379600 (+) 1329 WP_046160586.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=397667 GII86_RS12655 WP_003230162.1 2374361..2374657(-) (comGC) [Bacillus subtilis strain P5_B2]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=397667 GII86_RS12655 WP_003230162.1 2374361..2374657(-) (comGC) [Bacillus subtilis strain P5_B2]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAGCATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment