Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HRE60_RS02045 Genome accession   NZ_CP054153
Coordinates   398889..399848 (+) Length   319 a.a.
NCBI ID   WP_181670970.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 393889..404848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS02035 (HRE60_02035) - 394497..395237 (-) 741 WP_070438422.1 CPBP family intramembrane glutamic endopeptidase -
  HRE60_RS02040 (HRE60_02040) - 395648..397585 (+) 1938 WP_181670969.1 GbpC/Spa domain-containing protein -
  HRE60_RS02045 (HRE60_02045) coiA 398889..399848 (+) 960 WP_181670970.1 competence protein CoiA family protein Machinery gene
  HRE60_RS02050 (HRE60_02050) pepF 399859..401664 (+) 1806 WP_181670971.1 oligoendopeptidase F Regulator
  HRE60_RS02055 (HRE60_02055) - 401877..403097 (+) 1221 WP_181670972.1 OFA family MFS transporter -
  HRE60_RS02060 (HRE60_02060) - 403169..403876 (+) 708 WP_181670973.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37880.61 Da        Isoelectric Point: 9.1550

>NTDB_id=397498 HRE60_RS02045 WP_181670970.1 398889..399848(+) (coiA) [Streptococcus salivarius strain DB-B5]
MLIAKNQEGNLVSALETSLQRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWSLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=397498 HRE60_RS02045 WP_181670970.1 398889..399848(+) (coiA) [Streptococcus salivarius strain DB-B5]
ATGTTAATTGCAAAAAATCAGGAGGGAAACCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAAGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTGTTGAGGCATGGTCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCAGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCTTTGTATAAATCTTTGGTTAACCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCCGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGCTCTCGTTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACTTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGTCGTTAACCGAAAATCTCATGACAGTTCTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTACCAAGTGACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.659

97.492

0.445
  coiA Streptococcus pneumoniae Rx1

45.659

97.492

0.445
  coiA Streptococcus pneumoniae D39

45.659

97.492

0.445
  coiA Streptococcus pneumoniae R6

45.659

97.492

0.445
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Lactococcus lactis subsp. cremoris KW2

36.061

100

0.373

Multiple sequence alignment