Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   HRE60_RS01640 Genome accession   NZ_CP054153
Coordinates   319039..319701 (+) Length   220 a.a.
NCBI ID   WP_181670938.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314039..324701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS01615 (HRE60_01615) - 314347..315057 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  HRE60_RS01620 (HRE60_01620) - 315191..315850 (+) 660 WP_181670936.1 CBS and ACT domain-containing protein -
  HRE60_RS01625 (HRE60_01625) cysK 316030..316956 (-) 927 WP_002883742.1 cysteine synthase A -
  HRE60_RS01630 (HRE60_01630) - 317058..317684 (-) 627 WP_151404719.1 YigZ family protein -
  HRE60_RS01635 (HRE60_01635) comFA/cflA 317739..319058 (+) 1320 WP_181670937.1 DEAD/DEAH box helicase Machinery gene
  HRE60_RS01640 (HRE60_01640) comFC/cflB 319039..319701 (+) 663 WP_181670938.1 ComF family protein Machinery gene
  HRE60_RS01645 (HRE60_01645) raiA 319780..320328 (+) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26170.39 Da        Isoelectric Point: 8.6041

>NTDB_id=397493 HRE60_RS01640 WP_181670938.1 319039..319701(+) (comFC/cflB) [Streptococcus salivarius strain DB-B5]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKFWMKKGYIPSHFAIYRYEE
NMKDYFSRYKFMGDYCLRKIFQQDIKNNLKPFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=397493 HRE60_RS01640 WP_181670938.1 319039..319701(+) (comFC/cflB) [Streptococcus salivarius strain DB-B5]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAAAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGGTGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAATTTTGGATGAAAAAAGGTTATATTCCTAGCCACTTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATAAAAAA
TAATTTAAAACCATTTTTTAAAAAAGGTTATACTATAGTGCCAGTCCCATTATCAGAAGAACGCCTGGTAGAAAGAGGAT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

45.946

100

0.464
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment