Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HRE60_RS00325 Genome accession   NZ_CP054153
Coordinates   55727..56317 (+) Length   196 a.a.
NCBI ID   WP_004181981.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50727..61317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS00300 (HRE60_00300) - 51857..52312 (-) 456 WP_004181953.1 DUF3021 domain-containing protein -
  HRE60_RS00305 (HRE60_00305) - 52309..52746 (-) 438 WP_118189691.1 LytTR family DNA-binding domain-containing protein -
  HRE60_RS00310 (HRE60_00310) - 52925..53230 (+) 306 WP_048674007.1 hypothetical protein -
  HRE60_RS00315 (HRE60_00315) hexB 53280..55217 (+) 1938 WP_181670841.1 DNA mismatch repair endonuclease MutL Machinery gene
  HRE60_RS00320 (HRE60_00320) - 55348..55569 (+) 222 WP_002886321.1 hypothetical protein -
  HRE60_RS00325 (HRE60_00325) ruvA 55727..56317 (+) 591 WP_004181981.1 Holliday junction branch migration protein RuvA Machinery gene
  HRE60_RS00330 (HRE60_00330) - 56326..56880 (+) 555 WP_004181971.1 DNA-3-methyladenine glycosylase I -
  HRE60_RS00335 (HRE60_00335) cinA 56977..58242 (+) 1266 WP_181670842.1 competence/damage-inducible protein A Machinery gene
  HRE60_RS00340 (HRE60_00340) recA 58283..59422 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  HRE60_RS00345 (HRE60_00345) spx 59592..59990 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21698.10 Da        Isoelectric Point: 5.6710

>NTDB_id=397477 HRE60_RS00325 WP_004181981.1 55727..56317(+) (ruvA) [Streptococcus salivarius strain DB-B5]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=397477 HRE60_RS00325 WP_004181981.1 55727..56317(+) (ruvA) [Streptococcus salivarius strain DB-B5]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ACGATGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGAAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGCTT
GCTCTTGGTTATAAAGCTGCAGAACTTAAGAAAATCAAGGCCTTCTTCGAAGGAACTAATGAAACGGCAGAGCAATACAT
TAAATCGGCTCTTAAGATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423