Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BSN5_RS02825 Genome accession   NC_014976
Coordinates   531792..532127 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis BSn5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 526792..537127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS02805 (BSn5_02835) gcvT 527384..528472 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  BSN5_RS02810 (BSn5_02840) hepAA 528914..530587 (+) 1674 WP_003230203.1 SNF2-related protein -
  BSN5_RS02815 (BSn5_02845) yqhG 530608..531402 (+) 795 WP_015714249.1 YqhG family protein -
  BSN5_RS02820 (BSn5_02850) sinI 531585..531758 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  BSN5_RS02825 (BSn5_02855) sinR 531792..532127 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  BSN5_RS02830 (BSn5_02860) tasA 532220..533005 (-) 786 WP_015714250.1 biofilm matrix protein TasA -
  BSN5_RS02835 (BSn5_02865) sipW 533069..533641 (-) 573 WP_003230181.1 signal peptidase I SipW -
  BSN5_RS02840 (BSn5_02870) tapA 533625..534386 (-) 762 WP_015714251.1 amyloid fiber anchoring/assembly protein TapA -
  BSN5_RS02845 (BSn5_02875) yqzG 534658..534984 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BSN5_RS02850 (BSn5_02880) spoIITA 535026..535205 (-) 180 WP_014480252.1 YqzE family protein -
  BSN5_RS02855 (BSn5_02885) comGG 535276..535650 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  BSN5_RS02860 (BSn5_02890) comGF 535651..536034 (-) 384 WP_038429292.1 ComG operon protein ComGF Machinery gene
  BSN5_RS02865 (BSn5_02895) comGE 536060..536407 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  BSN5_RS02870 (BSn5_02900) comGD 536391..536822 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  BSN5_RS02875 (BSn5_02905) comGC 536812..537108 (-) 297 WP_015714256.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=39738 BSN5_RS02825 WP_003226345.1 531792..532127(+) (sinR) [Bacillus subtilis BSn5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=39738 BSN5_RS02825 WP_003226345.1 531792..532127(+) (sinR) [Bacillus subtilis BSn5]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment