Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N028_RS22980 Genome accession   NZ_CP045799
Coordinates   5238450..5239004 (-) Length   184 a.a.
NCBI ID   WP_024638200.1    Uniprot ID   -
Organism   Pseudomonas syringae USA011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5233450..5244004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N028_RS22955 (N028_22955) - 5233702..5234595 (+) 894 WP_024638204.1 ABC transporter permease subunit -
  N028_RS22960 (N028_22960) - 5234592..5235698 (+) 1107 WP_024638203.1 ABC transporter ATP-binding protein -
  N028_RS22965 (N028_22965) - 5235705..5236466 (+) 762 WP_024638202.1 glycerophosphoryl diester phosphodiesterase -
  N028_RS22970 (N028_22970) - 5236463..5237206 (+) 744 WP_003400414.1 inositol monophosphatase family protein -
  N028_RS22975 (N028_22975) - 5237206..5238318 (+) 1113 WP_024638201.1 endo-1,4-beta-xylanase -
  N028_RS22980 (N028_22980) ssb 5238450..5239004 (-) 555 WP_024638200.1 single-stranded DNA-binding protein Machinery gene
  N028_RS22985 (N028_22985) - 5239014..5240408 (-) 1395 WP_003400420.1 MFS transporter -
  N028_RS22990 (N028_22990) uvrA 5240538..5243372 (+) 2835 WP_024638199.1 excinuclease ABC subunit UvrA -
  N028_RS22995 (N028_22995) bfr 5243467..5243931 (-) 465 WP_003317095.1 bacterioferritin -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20492.60 Da        Isoelectric Point: 5.9539

>NTDB_id=397316 N028_RS22980 WP_024638200.1 5238450..5239004(-) (ssb) [Pseudomonas syringae USA011]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQPPQQRDS
RPAPQQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=397316 N028_RS22980 WP_024638200.1 5238450..5239004(-) (ssb) [Pseudomonas syringae USA011]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAACGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGCGGTGGCAACTACAACCAGTCCGCGC
CTCGTCCACAGCAGTCGCGCCCACAACAGTCGGCGCCGCAGCAGAACTACAATCAGCAGCCGCCACAACAGCGCGACTCG
CGCCCAGCGCCGCAACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.565
  ssb Glaesserella parasuis strain SC1401

49.189

100

0.495
  ssb Neisseria meningitidis MC58

44.262

99.457

0.44
  ssb Neisseria gonorrhoeae MS11

44.262

99.457

0.44

Multiple sequence alignment