Detailed information NTG0397297

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N028_RS03465
• Genome accession: NZ_CP045799
• Coordinates: 759644..760981 (-)
• Length: 445 a.a.
• NCBI ID: WP_024639450.1
• Uniprot ID: A0A3M5X437
• Organism: Pseudomonas syringae USA011
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 754644..765981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N028_RS03445 (N028_03445)	-	754773..757982 (+)	3210	WP_024639447.1	pilus assembly protein	-
N028_RS03450 (N028_03450)	-	757994..758401 (+)	408	WP_024639448.1	type IV pilin protein	-
N028_RS03455 (N028_03455)	thiO	758427..759530 (+)	1104	WP_024639449.1	glycine oxidase ThiO	-
N028_RS03465 (N028_03465)	pilR	759644..760981 (-)	1338	WP_024639450.1	sigma-54-dependent transcriptional regulator	Regulator
N028_RS03470 (N028_03470)	pilS	760984..762576 (-)	1593	WP_003403505.1	sensor histidine kinase	Regulator
N028_RS03475 (N028_03475)	-	762566..762805 (-)	240	WP_032611259.1	PP0621 family protein	-
N028_RS03480 (N028_03480)	-	762926..763948 (-)	1023	WP_003371138.1	outer membrane protein assembly factor BamD	-
N028_RS03485 (N028_03485)	rluD	764098..765060 (+)	963	WP_024639452.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
N028_RS03490 (N028_03490)	pgeF	765057..765785 (+)	729	WP_024639453.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49751.70 Da
• Isoelectric Point: 6.3796

>NTDB_id=397297 N028_RS03465 WP_024639450.1 759644..760981(-) (pilR) [Pseudomonas syringae USA011]
MTQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRSQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQENDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=397297 N028_RS03465 WP_024639450.1 759644..760981(-) (pilR) [Pseudomonas syringae USA011]
ATGACCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGCGCCCGTAACGTCGCCGAGGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCGGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATCCACGCGCTGAAGGCCGGAGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTGGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCGCAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAGTCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCAGGCAGTGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAACTCATGGAAAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GCGCCCACGAAGACAAGCCAGGTCTGTTTCAGGCGGCGCATACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTTGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAACAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAACGACGGCCCGAGCCTGGCCGATATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACCCGCTGGAACCGCACCGCGGCGGCAGAAAG
ACTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

3D structure

• AlphaFold DB: A0A3M5X437

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.201	99.551	0.769
pilR	Acinetobacter baumannii strain A118	48.608	100	0.51
luxO	Vibrio cholerae strain A1552	37.613	99.775	0.375