Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   TSC_RS10150 Genome accession   NC_014974
Coordinates   1962313..1964592 (+) Length   759 a.a.
NCBI ID   WP_041438673.1    Uniprot ID   -
Organism   Thermus scotoductus SA-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957313..1969592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TSC_RS10125 (TSC_c20650) - 1957829..1958833 (+) 1005 WP_015717933.1 homoisocitrate dehydrogenase -
  TSC_RS10130 (TSC_c20660) pilM 1959013..1960146 (+) 1134 WP_015717934.1 type IV pilus assembly protein PilM Machinery gene
  TSC_RS10135 (TSC_c20670) pilN 1960139..1960762 (+) 624 WP_015717935.1 competence protein Machinery gene
  TSC_RS10140 (TSC_c20680) pilO 1960752..1961375 (+) 624 WP_015717936.1 type 4a pilus biogenesis protein PilO Machinery gene
  TSC_RS10145 (TSC_c20690) pilW 1961372..1962316 (+) 945 WP_015717937.1 hypothetical protein Machinery gene
  TSC_RS10150 (TSC_c20700) pilQ 1962313..1964592 (+) 2280 WP_041438673.1 secretin N-terminal domain-containing protein Machinery gene
  TSC_RS10155 (TSC_c20710) aroC 1964696..1965847 (+) 1152 WP_015717939.1 chorismate synthase -
  TSC_RS10160 (TSC_c20720) - 1965865..1966419 (+) 555 WP_015717940.1 shikimate kinase -
  TSC_RS10165 (TSC_c20730) - 1966397..1967431 (+) 1035 WP_015717941.1 3-dehydroquinate synthase family protein -
  TSC_RS10170 (TSC_c20740) - 1967428..1967775 (+) 348 WP_234944425.1 type II toxin-antitoxin system VapC family toxin -
  TSC_RS10175 (TSC_c20750) rsmF 1967781..1969148 (-) 1368 WP_015717943.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
  TSC_RS13490 (TSC_c20760) - 1969206..1969334 (+) 129 WP_015717944.1 hypothetical protein -

Sequence

Protein


Download         Length: 759 a.a.        Molecular weight: 83181.72 Da        Isoelectric Point: 6.0375

>NTDB_id=39727 TSC_RS10150 WP_041438673.1 1962313..1964592(+) (pilQ) [Thermus scotoductus SA-01]
MRTALMKLVIPGLLALGMGVLAGSLPQEPRFDAKVDLKVSESQVRAGLTMPLDVVLEALARSVGLQPLIYRAYDASGDPA
KAQPPLPNIKLDFQGKPFREVWDLLFATYGTQFNLDYLLLPPDVVVVAPTQVITALVDAPSRTGAMERKPYLVAIPEIAY
RRTETDAQGQARTVVNIDGAKGWVQNDLLPFLSREASGLSVNWIVVEEGGKLRALLSVLATPEQHIRFSDILQRAGIDFR
PLPALTLPKPRVERTYALTHSTFSEILSFLQTQVPNAQVAVVPTDPKRALITATEEDHTRIAELLKVVDVPKPTPVVRRV
YALQNLTFQEAQQRLKPVLERELKGARLEGVPGNPKALLLEATEADQAFFAEILKAADVPPQVAPPTQEATVRRLYPLRF
ADAEKVAPFLAREVPGIVVQTVPGQPVLSVRGTEKQLSEVENLLAQIDRAPEQGPPVFQRSYQLSNAKATELAKVLQEAL
QARQAQVPQSQAQPQAPTRQATVVADERTNTLIVTGTQEDLALVEGLIPKLDQAVPQVNLRVRIQEVQSNFTRNLGIKWN
TIAGGNVAASILDSGLSLIFDSTRSLAALNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVVNDRVER
VPFDIGIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGGLTSQENTQVQQGVP
LLMDIPLIGELFKQRSQETTDRELLVVITADILKETASR

Nucleotide


Download         Length: 2280 bp        

>NTDB_id=39727 TSC_RS10150 WP_041438673.1 1962313..1964592(+) (pilQ) [Thermus scotoductus SA-01]
GTGAGAACGGCACTTATGAAACTTGTGATCCCCGGCCTTTTGGCCCTGGGCATGGGGGTCCTGGCGGGAAGCCTTCCCCA
GGAACCCCGCTTTGACGCCAAGGTGGACCTGAAGGTTTCTGAAAGCCAGGTGCGGGCCGGGCTCACCATGCCTCTGGATG
TGGTCCTGGAAGCCCTGGCCCGGAGCGTGGGCCTTCAGCCCCTTATCTACCGGGCCTACGACGCCTCCGGCGACCCGGCC
AAGGCCCAGCCTCCCTTACCCAACATCAAGCTGGACTTCCAGGGCAAACCCTTCCGGGAAGTCTGGGACCTCCTCTTCGC
CACCTACGGCACCCAGTTCAACCTGGACTACCTCCTCCTGCCTCCTGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCA
CCGCCTTGGTGGACGCCCCAAGCCGCACCGGGGCCATGGAGCGGAAGCCCTACCTGGTGGCCATCCCCGAGATCGCCTAC
CGGCGCACGGAAACCGACGCCCAGGGCCAGGCCCGCACCGTGGTGAACATAGATGGGGCCAAGGGCTGGGTGCAAAACGA
TCTCCTGCCCTTCCTTTCCCGGGAAGCCAGCGGGCTTAGCGTGAACTGGATTGTGGTAGAGGAAGGGGGCAAACTCAGGG
CCCTGCTCTCTGTCCTGGCCACCCCAGAACAGCACATTCGCTTCTCGGACATTCTCCAGCGGGCAGGGATTGACTTCCGC
CCCTTGCCCGCCCTCACCCTACCTAAACCAAGGGTAGAACGCACCTATGCCCTTACCCATTCCACCTTCTCGGAAATCCT
TTCCTTCCTGCAAACACAGGTCCCGAACGCCCAGGTGGCCGTGGTCCCCACCGACCCCAAACGGGCCCTCATCACCGCCA
CCGAGGAGGACCATACCCGCATCGCTGAACTTCTGAAGGTGGTCGATGTACCCAAGCCCACCCCCGTGGTGCGCCGGGTC
TACGCCTTGCAGAACCTCACCTTCCAGGAAGCCCAGCAAAGGCTTAAGCCCGTCCTGGAAAGGGAGTTGAAAGGAGCCCG
CCTGGAAGGTGTCCCAGGTAACCCCAAAGCCCTTCTTCTGGAGGCTACCGAAGCCGACCAGGCCTTCTTCGCCGAGATCC
TCAAGGCCGCCGATGTGCCTCCCCAGGTGGCCCCGCCCACCCAGGAGGCCACGGTGCGGAGGCTCTACCCCTTGCGCTTC
GCCGATGCCGAAAAGGTGGCTCCCTTCCTGGCTCGGGAGGTGCCAGGGATTGTGGTGCAGACGGTACCCGGGCAACCGGT
CCTCTCCGTGCGGGGAACGGAGAAGCAGCTTTCTGAAGTGGAGAACCTCCTGGCTCAGATCGACCGGGCTCCCGAGCAGG
GGCCACCTGTCTTCCAGCGTTCCTACCAGCTCTCCAACGCCAAGGCCACCGAGCTGGCCAAGGTGCTCCAGGAGGCTTTG
CAAGCCCGGCAGGCCCAGGTTCCCCAGAGCCAGGCCCAGCCCCAAGCCCCCACACGCCAGGCCACGGTGGTGGCGGACGA
GCGCACCAATACCCTGATCGTCACGGGCACACAGGAGGACCTAGCCCTGGTGGAGGGCCTCATCCCTAAGCTGGACCAGG
CGGTGCCCCAGGTGAACCTAAGGGTGCGCATCCAGGAGGTGCAGTCCAACTTCACCCGCAACCTGGGCATCAAGTGGAAC
ACCATTGCCGGGGGGAACGTGGCGGCCAGCATCCTGGACTCTGGGCTTTCCCTGATCTTTGACAGCACCAGGAGCCTGGC
GGCCTTGAACATCCTGGCCACCCTCGAGGCCCTCCAGCGCCAGGGTCTTTCCCGGGCCCTCAGGGATGTGAACCAGACCG
TCCTCAACAACCAAACCGCCCGCCTGCAATCCGGGGAGACCTTCCTCATCCGCCGGGTGGTGAACGACCGGGTGGAGCGG
GTACCCTTTGACATCGGCATCATCGTGGAGGTGACCCCCCAGATCACCGCCGACGGGCAGATCCTCCTCAACATCAAGGC
GGAGGTTTCCGGAAACGTCCAGCGCAACCCGGTGGACGGGGATGTGGACCGGTTCACCAAGCAGGTGGTAACCACCACCT
TAAGGGTGCGGGACGGGCAGACCGTGGTCCTCGGGGGCCTCACCTCCCAGGAGAACACCCAGGTGCAACAGGGCGTGCCC
CTTCTCATGGATATCCCCCTGATTGGGGAACTCTTCAAGCAAAGGAGCCAGGAGACCACCGACCGGGAGCTACTGGTGGT
CATCACCGCCGACATCTTGAAGGAAACCGCAAGCCGCTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(597-754)

Bacterial type II/III secretion system short domain (Secretin_N)

(460-537)

Bacterial type II/III secretion system short domain (Secretin_N)

(394-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Thermus thermophilus HB27

81.794

99.868

0.817

Multiple sequence alignment