Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | TSC_RS10135 | Genome accession | NC_014974 |
| Coordinates | 1960139..1960762 (+) | Length | 207 a.a. |
| NCBI ID | WP_015717935.1 | Uniprot ID | - |
| Organism | Thermus scotoductus SA-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1955139..1965762
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TSC_RS10115 (TSC_c20630) | - | 1955796..1957211 (+) | 1416 | WP_015717931.1 | HD-GYP domain-containing protein | - |
| TSC_RS10120 (TSC_c20640) | - | 1957247..1957756 (+) | 510 | WP_041439009.1 | DUF5317 domain-containing protein | - |
| TSC_RS10125 (TSC_c20650) | - | 1957829..1958833 (+) | 1005 | WP_015717933.1 | homoisocitrate dehydrogenase | - |
| TSC_RS10130 (TSC_c20660) | pilM | 1959013..1960146 (+) | 1134 | WP_015717934.1 | type IV pilus assembly protein PilM | Machinery gene |
| TSC_RS10135 (TSC_c20670) | pilN | 1960139..1960762 (+) | 624 | WP_015717935.1 | competence protein | Machinery gene |
| TSC_RS10140 (TSC_c20680) | pilO | 1960752..1961375 (+) | 624 | WP_015717936.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| TSC_RS10145 (TSC_c20690) | pilW | 1961372..1962316 (+) | 945 | WP_015717937.1 | hypothetical protein | Machinery gene |
| TSC_RS10150 (TSC_c20700) | pilQ | 1962313..1964592 (+) | 2280 | WP_041438673.1 | secretin N-terminal domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23163.66 Da Isoelectric Point: 10.3940
>NTDB_id=39724 TSC_RS10135 WP_015717935.1 1960139..1960762(+) (pilN) [Thermus scotoductus SA-01]
MIRLNLLPKNLRRRIEPGWWRLAAGAFALLTLSFLGFLHYTAYTELTLAKQERDALKAEVEALKPFIAEQNRLVQERKAL
EALLAIREGLKKNFVPWSEYLAAFIRQIPQQGGRLPVALRSVGTRAIPEDEANRMAQAGTYDGKKVQVEFTVQGEALNQN
ALVNFVRAFETSPRFGIEFQGASLDQNRGLYTFSARVGLVGGGESAR
MIRLNLLPKNLRRRIEPGWWRLAAGAFALLTLSFLGFLHYTAYTELTLAKQERDALKAEVEALKPFIAEQNRLVQERKAL
EALLAIREGLKKNFVPWSEYLAAFIRQIPQQGGRLPVALRSVGTRAIPEDEANRMAQAGTYDGKKVQVEFTVQGEALNQN
ALVNFVRAFETSPRFGIEFQGASLDQNRGLYTFSARVGLVGGGESAR
Nucleotide
Download Length: 624 bp
>NTDB_id=39724 TSC_RS10135 WP_015717935.1 1960139..1960762(+) (pilN) [Thermus scotoductus SA-01]
TTGATTAGGCTTAACCTTCTCCCCAAAAACCTGCGCCGCCGCATTGAACCGGGTTGGTGGCGCCTGGCGGCGGGGGCCTT
TGCCCTGCTGACCCTTTCCTTTTTGGGCTTTCTCCACTACACCGCCTACACCGAACTTACCCTGGCCAAGCAGGAAAGGG
ATGCCCTGAAAGCTGAGGTAGAGGCCCTAAAACCCTTTATTGCCGAACAAAACCGCCTGGTGCAGGAGAGGAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTTAAGAAGAACTTCGTCCCCTGGTCCGAGTACCTGGCGGCCTTTATCCGGCA
AATCCCCCAGCAAGGCGGACGCCTCCCCGTGGCCCTGCGCTCCGTGGGTACCCGGGCCATTCCCGAGGACGAGGCTAACC
GGATGGCTCAAGCCGGGACCTATGATGGCAAGAAGGTGCAGGTGGAGTTCACCGTGCAGGGGGAAGCCCTGAACCAAAAC
GCCCTGGTGAACTTCGTGCGGGCTTTTGAAACCTCACCCCGATTCGGCATAGAGTTCCAGGGGGCTTCCCTGGACCAGAA
CCGGGGGCTTTATACCTTCAGCGCCCGGGTGGGCCTGGTGGGAGGTGGGGAAAGTGCTCGCTAG
TTGATTAGGCTTAACCTTCTCCCCAAAAACCTGCGCCGCCGCATTGAACCGGGTTGGTGGCGCCTGGCGGCGGGGGCCTT
TGCCCTGCTGACCCTTTCCTTTTTGGGCTTTCTCCACTACACCGCCTACACCGAACTTACCCTGGCCAAGCAGGAAAGGG
ATGCCCTGAAAGCTGAGGTAGAGGCCCTAAAACCCTTTATTGCCGAACAAAACCGCCTGGTGCAGGAGAGGAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTTAAGAAGAACTTCGTCCCCTGGTCCGAGTACCTGGCGGCCTTTATCCGGCA
AATCCCCCAGCAAGGCGGACGCCTCCCCGTGGCCCTGCGCTCCGTGGGTACCCGGGCCATTCCCGAGGACGAGGCTAACC
GGATGGCTCAAGCCGGGACCTATGATGGCAAGAAGGTGCAGGTGGAGTTCACCGTGCAGGGGGAAGCCCTGAACCAAAAC
GCCCTGGTGAACTTCGTGCGGGCTTTTGAAACCTCACCCCGATTCGGCATAGAGTTCCAGGGGGCTTCCCTGGACCAGAA
CCGGGGGCTTTATACCTTCAGCGCCCGGGTGGGCCTGGTGGGAGGTGGGGAAAGTGCTCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
75.362 |
100 |
0.754 |