Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GH770_RS07665 Genome accession   NZ_CP045784
Coordinates   1492318..1492854 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain CFSAN029786     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1487318..1497854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH770_RS07645 (GH770_07645) aphA 1487607..1488320 (+) 714 WP_005026022.1 acid phosphatase AphA -
  GH770_RS07650 (GH770_07650) - 1488431..1488847 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  GH770_RS07655 (GH770_07655) - 1488851..1489207 (+) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  GH770_RS07660 (GH770_07660) uvrA 1489242..1492064 (-) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  GH770_RS07665 (GH770_07665) ssb 1492318..1492854 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GH770_RS07670 (GH770_07670) - 1492953..1493234 (-) 282 WP_001295689.1 YjcB family protein -
  GH770_RS07675 (GH770_07675) pdeC 1493664..1494398 (+) 735 Protein_1515 c-di-GMP phosphodiesterase PdeC -
  GH770_RS07680 (GH770_07680) - 1494455..1495152 (+) 698 WP_284526291.1 IS1 family transposase -
  GH770_RS07685 (GH770_07685) - 1495315..1496012 (+) 698 WP_237161005.1 IS1 family transposase -
  GH770_RS07690 (GH770_07690) pdeC 1496029..1496508 (+) 480 Protein_1518 c-di-GMP phosphodiesterase PdeC -
  GH770_RS07695 (GH770_07695) soxS 1496511..1496834 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  GH770_RS07700 (GH770_07700) soxR 1496920..1497384 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=397156 GH770_RS07665 WP_000168305.1 1492318..1492854(+) (ssb) [Shigella dysenteriae strain CFSAN029786]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=397156 GH770_RS07665 WP_000168305.1 1492318..1492854(+) (ssb) [Shigella dysenteriae strain CFSAN029786]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment