Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FOC71_RS04375 Genome accession   NZ_CP053999
Coordinates   839401..840066 (+) Length   221 a.a.
NCBI ID   WP_003073628.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834401..845066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04360 (FOC71_04360) cysK 836383..837312 (-) 930 WP_003073632.1 cysteine synthase A -
  FOC71_RS04365 (FOC71_04365) - 837411..838046 (-) 636 WP_003073631.1 YigZ family protein -
  FOC71_RS04370 (FOC71_04370) comFA/cflA 838103..839404 (+) 1302 WP_003073629.1 DEAD/DEAH box helicase Machinery gene
  FOC71_RS04375 (FOC71_04375) comFC/cflB 839401..840066 (+) 666 WP_003073628.1 ComF family protein Machinery gene
  FOC71_RS04380 (FOC71_04380) raiA 840145..840687 (+) 543 WP_003073626.1 ribosome-associated translation inhibitor RaiA -
  FOC71_RS04385 (FOC71_04385) rsmD 840886..841425 (+) 540 WP_003073624.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOC71_RS04390 (FOC71_04390) coaD 841415..841912 (+) 498 WP_003073622.1 pantetheine-phosphate adenylyltransferase -
  FOC71_RS04395 (FOC71_04395) sepM 841893..842948 (+) 1056 WP_003073620.1 SepM family pheromone-processing serine protease Regulator
  FOC71_RS04400 (FOC71_04400) - 843230..843793 (+) 564 WP_003073618.1 YutD family protein -
  FOC71_RS04405 (FOC71_04405) rlmN 843827..844909 (+) 1083 WP_003073615.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25440.40 Da        Isoelectric Point: 7.6869

>NTDB_id=397014 FOC71_RS04375 WP_003073628.1 839401..840066(+) (comFC/cflB) [Streptococcus intermedius strain FDAARGOS_769]
MNVCVLCDNSLGEKLTFCDLLSLTKPKIRACDACFDKFQRISEQHCPKCYRDGTSEICVDCQVWLEKGKEVSHKSCFVYN
ETMKDFFSQYKFQGDYALYSVFTEMLQKELKAYSDYTLVPIPVSSEKYQKRGFNQVTALLEGTKLPFREILEKYDTIAQS
SKTRKERLQSQQCFKLKDSVQPPTKVLLLDDIYTTGSTLQLAKEILVEAGVKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=397014 FOC71_RS04375 WP_003073628.1 839401..840066(+) (comFC/cflB) [Streptococcus intermedius strain FDAARGOS_769]
ATGAATGTATGTGTTTTATGTGACAATTCTCTTGGCGAAAAACTGACATTTTGTGATTTATTGTCCTTGACTAAGCCAAA
AATAAGGGCTTGTGATGCCTGCTTTGACAAATTTCAGCGTATTTCAGAGCAGCATTGTCCTAAGTGTTATCGGGATGGAA
CAAGTGAAATCTGTGTAGATTGCCAAGTATGGCTGGAAAAAGGAAAAGAAGTTTCTCATAAAAGTTGTTTTGTTTATAAT
GAAACTATGAAAGACTTCTTTAGTCAATATAAATTTCAAGGAGATTATGCTCTTTATTCTGTATTTACAGAGATGTTGCA
AAAAGAATTAAAAGCCTATAGCGATTATACACTTGTTCCTATTCCTGTAAGTAGTGAAAAGTACCAGAAGCGAGGCTTCA
ACCAAGTAACAGCTCTCCTTGAGGGGACAAAGTTGCCGTTTAGAGAAATTTTAGAAAAGTATGATACGATTGCTCAATCA
AGTAAGACAAGAAAGGAGCGTTTGCAAAGTCAGCAGTGTTTTAAACTGAAAGACAGTGTTCAGCCTCCGACAAAAGTTCT
TTTGCTAGATGACATTTATACGACTGGCTCAACCCTACAGTTAGCAAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTATGACATTTTCATTGGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae TIGR4

46.789

98.643

0.462
  comFC/cflB Streptococcus mitis NCTC 12261

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae Rx1

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.33

98.643

0.457

Multiple sequence alignment