Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GH771_RS22060 Genome accession   NZ_CP045769
Coordinates   4720817..4721875 (+) Length   352 a.a.
NCBI ID   WP_042321788.1    Uniprot ID   A0AAP8NVQ3
Organism   Enterobacter cancerogenus strain MiY-F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4715817..4726875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH771_RS22035 (GH771_22035) mltB 4716338..4717438 (+) 1101 WP_208789249.1 lytic murein transglycosylase B -
  GH771_RS22040 (GH771_22040) - 4717696..4718349 (+) 654 WP_101737082.1 ATP-binding cassette domain-containing protein -
  GH771_RS22045 (GH771_22045) - 4718346..4719221 (+) 876 WP_088208662.1 metal ABC transporter permease -
  GH771_RS22050 (GH771_22050) - 4719221..4720099 (+) 879 WP_153689622.1 metal ABC transporter substrate-binding protein -
  GH771_RS22055 (GH771_22055) pncC 4720230..4720727 (+) 498 WP_006178162.1 nicotinamide-nucleotide amidase -
  GH771_RS22060 (GH771_22060) recA 4720817..4721875 (+) 1059 WP_042321788.1 recombinase RecA Machinery gene
  GH771_RS22065 (GH771_22065) recX 4721946..4722446 (+) 501 WP_153689491.1 recombination regulator RecX -
  GH771_RS22070 (GH771_22070) alaS 4722578..4725205 (+) 2628 WP_006178159.1 alanine--tRNA ligase -
  GH771_RS22075 (GH771_22075) csrA 4725447..4725632 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37840.23 Da        Isoelectric Point: 4.8057

>NTDB_id=397014 GH771_RS22060 WP_042321788.1 4720817..4721875(+) (recA) [Enterobacter cancerogenus strain MiY-F]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKDNPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=397014 GH771_RS22060 WP_042321788.1 4720817..4721875(+) (recA) [Enterobacter cancerogenus strain MiY-F]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATCGCACTGGGCG
CGGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGGCCGGAATCCTCAGGTAAAACCACGCTGACCCTGCAGGTC
GTTGCGGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTTGACCCCGTCTACGCACGTAA
GCTGGGTGTTGATATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGCGAGCAAGCGCTGGAAATTTGTGACGCGCTGG
CACGTTCTGGTGCGGTTGACGTTATCGTGGTTGACTCCGTTGCCGCGCTGACGCCAAAAGCCGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCAGGTAACCTGAAACAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGTAACCCGGAAACCACCACTGGCGGTA
ACGCGCTGAAATTCTACGCGTCTGTGCGTCTGGATATCCGCCGTATTGGCGCGGTGAAAGACGGTGAGAACGTGGTGGGT
AGTGAAACCCGCGTGAAGGTTGTGAAGAACAAAATTGCAGCTCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGATAAAATTGGTCAGGGTAAAGCCAATGCCATTTCCTGGCTGAAAGATAACCCGGCCGCGGCGAAAGAGATC
GAGAAAAAGGTGCGTGAGCTTCTGCTGAACAACCAGGACTCCAAACCGGATTTCGTGGTTGATGCTGCAGATGCTGAAGA
AACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Pseudomonas stutzeri DSM 10701

71.965

98.295

0.707
  recA Acinetobacter baumannii D1279779

69.914

99.148

0.693
  recA Acinetobacter baylyi ADP1

73.476

93.182

0.685
  recA Glaesserella parasuis strain SC1401

68.786

98.295

0.676
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus mitis SK321

63.158

91.761

0.58
  recA Streptococcus mitis NCTC 12261

63.158

91.761

0.58
  recA Streptococcus pyogenes NZ131

62.462

92.33

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus mutans UA159

62.154

92.33

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.33

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.761

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment