Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FOC71_RS04280 Genome accession   NZ_CP053999
Coordinates   820737..821369 (+) Length   210 a.a.
NCBI ID   WP_003073662.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 815737..826369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04260 (FOC71_04260) - 816171..816911 (+) 741 WP_003073671.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  FOC71_RS04265 (FOC71_04265) stkP 816908..818782 (+) 1875 WP_003073669.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  FOC71_RS04270 (FOC71_04270) liaF 819045..819743 (+) 699 WP_020998987.1 cell wall-active antibiotics response protein LiaF -
  FOC71_RS04275 (FOC71_04275) - 819740..820735 (+) 996 WP_003073664.1 sensor histidine kinase -
  FOC71_RS04280 (FOC71_04280) vraR 820737..821369 (+) 633 WP_003073662.1 response regulator transcription factor Regulator
  FOC71_RS04285 (FOC71_04285) - 821409..822809 (+) 1401 WP_003073660.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FOC71_RS04290 (FOC71_04290) - 822811..823203 (+) 393 WP_003073658.1 S1 RNA-binding domain-containing protein -
  FOC71_RS04295 (FOC71_04295) - 823323..823640 (-) 318 WP_003073656.1 DUF960 domain-containing protein -
  FOC71_RS04300 (FOC71_04300) - 823760..824293 (-) 534 WP_003073655.1 DUF402 domain-containing protein -
  FOC71_RS04305 (FOC71_04305) recX 824380..825156 (-) 777 WP_003073653.1 recombination regulator RecX Regulator
  FOC71_RS04310 (FOC71_04310) - 825220..825996 (-) 777 WP_003073652.1 aminoglycoside 3'-phosphotransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23710.39 Da        Isoelectric Point: 4.8916

>NTDB_id=397011 FOC71_RS04280 WP_003073662.1 820737..821369(+) (vraR) [Streptococcus intermedius strain FDAARGOS_769]
MQILLVDDHEMVRLGLKSYLDVQDNVDMVVEASNGCEGVEKALSLRPDVIMMDIVMPKMNGIEATLAILKEWPEAKILIL
TSYLDNEKIYPVLDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEELTARERDILGLLAKGY
ENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLVPQDDI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=397011 FOC71_RS04280 WP_003073662.1 820737..821369(+) (vraR) [Streptococcus intermedius strain FDAARGOS_769]
ATGCAGATTTTATTAGTAGATGATCATGAAATGGTGCGACTTGGTTTGAAGAGCTATTTGGATGTACAAGATAATGTTGA
TATGGTGGTAGAAGCTTCAAATGGTTGTGAAGGGGTGGAAAAGGCTCTGTCATTACGACCAGATGTGATAATGATGGATA
TTGTCATGCCTAAAATGAATGGGATTGAAGCTACACTTGCTATTTTAAAAGAATGGCCTGAAGCTAAAATTCTTATTTTG
ACTTCTTATTTAGATAATGAAAAAATTTACCCAGTTTTAGATGCAGGGGCTAAAGGATACATGCTTAAAACATCTAGTGC
TGACGATATCTTACGAGCAGTTCGAAAGGTAGCCAAGGGTGAACTTGCTATTGAAACAGAGGTCAGTCAGAAAGTGGAAT
ACCATCGAAATCATATTGAATTACATGAAGAGCTAACAGCGCGTGAGCGCGATATTTTAGGTCTATTAGCAAAAGGGTAT
GAAAATCAACGGATAGCAGATGAGTTGTTTATTTCGTTGAAGACTGTTAAAACACATGTATCTAATATCTTATCAAAATT
AGAAGTAAGTGATCGGACACAAGCTGTTGTTTACGCCTTTCAGCACCACCTTGTCCCACAAGATGACATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.398

98.095

0.524
  degU Bacillus subtilis subsp. subtilis str. 168

38.839

100

0.414