Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   FOC71_RS04305 Genome accession   NZ_CP053999
Coordinates   824380..825156 (-) Length   258 a.a.
NCBI ID   WP_003073653.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 819380..830156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04275 (FOC71_04275) - 819740..820735 (+) 996 WP_003073664.1 sensor histidine kinase -
  FOC71_RS04280 (FOC71_04280) vraR 820737..821369 (+) 633 WP_003073662.1 response regulator transcription factor Regulator
  FOC71_RS04285 (FOC71_04285) - 821409..822809 (+) 1401 WP_003073660.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FOC71_RS04290 (FOC71_04290) - 822811..823203 (+) 393 WP_003073658.1 S1 RNA-binding domain-containing protein -
  FOC71_RS04295 (FOC71_04295) - 823323..823640 (-) 318 WP_003073656.1 DUF960 domain-containing protein -
  FOC71_RS04300 (FOC71_04300) - 823760..824293 (-) 534 WP_003073655.1 DUF402 domain-containing protein -
  FOC71_RS04305 (FOC71_04305) recX 824380..825156 (-) 777 WP_003073653.1 recombination regulator RecX Regulator
  FOC71_RS04310 (FOC71_04310) - 825220..825996 (-) 777 WP_003073652.1 aminoglycoside 3'-phosphotransferase -
  FOC71_RS04315 (FOC71_04315) rlmD 826053..827432 (+) 1380 WP_003073649.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  FOC71_RS04320 (FOC71_04320) - 827797..828030 (+) 234 WP_003073647.1 DUF1858 domain-containing protein -
  FOC71_RS04325 (FOC71_04325) - 828030..829391 (+) 1362 WP_003073645.1 DUF438 domain-containing protein -
  FOC71_RS04330 (FOC71_04330) - 829402..829656 (+) 255 WP_003073643.1 DUF1912 family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30346.92 Da        Isoelectric Point: 8.8262

>NTDB_id=397012 FOC71_RS04305 WP_003073653.1 824380..825156(-) (recX) [Streptococcus intermedius strain FDAARGOS_769]
MKITKIEKKNRLYLLELDETDKLYITEDTIVHFMLSKGMNISEQELKEIQDYAQFSYGKNLALYYLSFKQRTVKEVRDYL
TKYEISLDTIEKVLTILIKDNWIDDRQYAYSFIHSNLLSGDKGAFVLKQKLTQKGITAPIIDEELCKFDFTEVSQKVAAK
LLRNYQSKLPSKALQDKILQSMLSKGFSYTEAKAAYQTLDIKEDEEIQQKLLYKELDKQYHKYSKKYDGYELKQRLTQAL
ARKGYDFSDIASALKEYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=397012 FOC71_RS04305 WP_003073653.1 824380..825156(-) (recX) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAAATCACTAAAATTGAAAAGAAAAATCGTCTCTATCTTTTAGAATTGGACGAAACTGACAAACTTTACATCACTGA
AGATACTATCGTTCACTTTATGTTATCAAAAGGCATGAATATCAGTGAGCAAGAATTAAAAGAAATTCAGGACTACGCAC
AGTTTTCTTACGGAAAAAATCTAGCTCTATATTATCTTTCTTTCAAGCAAAGAACTGTCAAAGAAGTGCGGGATTATTTG
ACAAAATACGAGATTTCCTTAGATACCATCGAGAAGGTGCTAACGATTCTCATAAAAGATAACTGGATAGATGACAGACA
ATATGCTTATTCCTTTATTCATTCCAATCTTCTATCTGGTGATAAAGGTGCTTTTGTCCTCAAGCAAAAATTGACTCAAA
AAGGTATCACAGCTCCTATTATTGATGAAGAATTATGCAAATTTGATTTTACAGAAGTAAGTCAAAAAGTCGCTGCAAAA
CTACTCCGCAACTATCAAAGCAAACTACCAAGTAAGGCCCTGCAGGATAAAATTCTTCAATCTATGTTGAGCAAAGGCTT
TTCCTATACCGAAGCTAAGGCAGCTTATCAAACCTTAGACATCAAAGAAGATGAGGAAATTCAGCAGAAATTACTGTACA
AAGAATTAGATAAGCAATACCACAAATATTCTAAAAAATATGACGGATATGAGTTAAAACAACGCCTCACCCAAGCACTC
GCTCGCAAAGGCTACGATTTTTCTGATATTGCGAGCGCTCTCAAAGAATATCTATAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(81-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.472

100

0.364