Detailed information NTG0039701

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STH8232_RS09990
• Genome accession: NC_017581
• Coordinates: 1916178..1917278 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus JIM 8232
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1911178..1922278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STH8232_RS09965 (STH8232_2320)	pgsA	1911720..1912262 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STH8232_RS09970 (STH8232_2321)	-	1912275..1913132 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
STH8232_RS09975 (STH8232_2322)	yfmH	1913191..1914468 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
STH8232_RS09980 (STH8232_2323)	yfmF	1914470..1915720 (-)	1251	WP_014622069.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
STH8232_RS09985 (STH8232_2324)	yaaA	1915798..1916175 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
STH8232_RS09990 (STH8232_2325)	recF	1916178..1917278 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
STH8232_RS09995 (STH8232_2326)	guaB	1917447..1918928 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
STH8232_RS10000 (STH8232_2327)	trpS	1919105..1920127 (-)	1023	WP_014622070.1	tryptophan--tRNA ligase	-
STH8232_RS10005 (STH8232_2328)	-	1920555..1921427 (+)	873	WP_011681764.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=39701 STH8232_RS09990 WP_002947786.1 1916178..1917278(+) (recF) [Streptococcus thermophilus JIM 8232]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=39701 STH8232_RS09990 WP_002947786.1 1916178..1917278(+) (recF) [Streptococcus thermophilus JIM 8232]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432