Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DESPR_RS10275 | Genome accession | NC_014972 |
| Coordinates | 2354555..2354980 (-) | Length | 141 a.a. |
| NCBI ID | WP_015724751.1 | Uniprot ID | A0A7U4DPJ8 |
| Organism | Desulfobulbus propionicus DSM 2032 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2349555..2359980
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DESPR_RS10255 (Despr_2059) | - | 2350703..2351209 (-) | 507 | WP_015724747.1 | NAD(P)H-dependent oxidoreductase subunit E | - |
| DESPR_RS10260 (Despr_2060) | - | 2351206..2352921 (-) | 1716 | WP_015724748.1 | NADH-quinone oxidoreductase subunit D | - |
| DESPR_RS10265 (Despr_2061) | nuoB | 2352924..2353436 (-) | 513 | WP_015724749.1 | NADH-quinone oxidoreductase subunit NuoB | - |
| DESPR_RS10270 (Despr_2062) | ndhC | 2353427..2353786 (-) | 360 | WP_015724750.1 | NADH-quinone oxidoreductase subunit A | - |
| DESPR_RS10275 (Despr_2063) | ssb | 2354555..2354980 (-) | 426 | WP_015724751.1 | single-stranded DNA-binding protein | Machinery gene |
| DESPR_RS10280 (Despr_2064) | amt | 2355197..2356597 (-) | 1401 | WP_015724752.1 | ammonium transporter | - |
| DESPR_RS10285 (Despr_2065) | - | 2356615..2356953 (-) | 339 | WP_015724753.1 | P-II family nitrogen regulator | - |
| DESPR_RS19220 (Despr_2066) | - | 2357557..2358057 (+) | 501 | WP_015724754.1 | NAD(P)H-dependent oxidoreductase subunit E | - |
| DESPR_RS10295 (Despr_2067) | - | 2358047..2359663 (+) | 1617 | WP_015724755.1 | NuoF family protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15523.45 Da Isoelectric Point: 5.9178
>NTDB_id=39701 DESPR_RS10275 WP_015724751.1 2354555..2354980(-) (ssb) [Desulfobulbus propionicus DSM 2032]
MINKVILIGNLGADPEIRYTQNGTPVATFTMATTERRKGQDGQVQEQTEWHRVVAWQRLAEICGEYLSKGSKVYIEGKLQ
TRKWKDQNGNDRYTTEIVAREMKMLSPRVAASGGGEYGGGGAGYGGDPFPEPPPMGDDVPF
MINKVILIGNLGADPEIRYTQNGTPVATFTMATTERRKGQDGQVQEQTEWHRVVAWQRLAEICGEYLSKGSKVYIEGKLQ
TRKWKDQNGNDRYTTEIVAREMKMLSPRVAASGGGEYGGGGAGYGGDPFPEPPPMGDDVPF
Nucleotide
Download Length: 426 bp
>NTDB_id=39701 DESPR_RS10275 WP_015724751.1 2354555..2354980(-) (ssb) [Desulfobulbus propionicus DSM 2032]
ATGATCAACAAAGTGATATTAATCGGTAATTTGGGTGCTGATCCTGAAATCCGCTATACCCAGAACGGAACGCCGGTGGC
AACATTTACCATGGCGACCACGGAAAGACGCAAAGGACAGGACGGTCAGGTTCAGGAGCAGACCGAATGGCACAGAGTCG
TGGCTTGGCAGCGGTTGGCGGAGATCTGTGGTGAGTATCTTTCGAAGGGGTCCAAGGTGTACATCGAGGGGAAGTTGCAG
ACGAGGAAATGGAAGGACCAGAACGGGAATGACCGCTATACCACTGAAATCGTGGCTCGAGAGATGAAAATGCTCTCACC
GAGAGTCGCCGCGTCCGGTGGAGGCGAATATGGAGGAGGTGGAGCGGGGTACGGTGGCGATCCTTTTCCCGAGCCGCCGC
CCATGGGAGATGATGTGCCGTTTTAG
ATGATCAACAAAGTGATATTAATCGGTAATTTGGGTGCTGATCCTGAAATCCGCTATACCCAGAACGGAACGCCGGTGGC
AACATTTACCATGGCGACCACGGAAAGACGCAAAGGACAGGACGGTCAGGTTCAGGAGCAGACCGAATGGCACAGAGTCG
TGGCTTGGCAGCGGTTGGCGGAGATCTGTGGTGAGTATCTTTCGAAGGGGTCCAAGGTGTACATCGAGGGGAAGTTGCAG
ACGAGGAAATGGAAGGACCAGAACGGGAATGACCGCTATACCACTGAAATCGTGGCTCGAGAGATGAAAATGCTCTCACC
GAGAGTCGCCGCGTCCGGTGGAGGCGAATATGGAGGAGGTGGAGCGGGGTACGGTGGCGATCCTTTTCCCGAGCCGCCGC
CCATGGGAGATGATGTGCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.007 |
100 |
0.525 |
| ssb | Glaesserella parasuis strain SC1401 |
53.488 |
91.489 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
50.42 |
84.397 |
0.426 |
| ssb | Neisseria meningitidis MC58 |
50.42 |
84.397 |
0.426 |