Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DESPR_RS00640 Genome accession   NC_014972
Coordinates   142624..143016 (+) Length   130 a.a.
NCBI ID   WP_015722871.1    Uniprot ID   A0A7U3YJ21
Organism   Desulfobulbus propionicus DSM 2032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 137624..148016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESPR_RS00625 (Despr_0129) - 139091..139915 (-) 825 WP_043770316.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  DESPR_RS00630 (Despr_0130) - 140807..141469 (+) 663 WP_015722869.1 hypothetical protein -
  DESPR_RS00635 (Despr_0131) - 141557..142528 (+) 972 WP_015722870.1 hypothetical protein -
  DESPR_RS00640 (Despr_0132) ssb 142624..143016 (+) 393 WP_015722871.1 single-stranded DNA-binding protein Machinery gene
  DESPR_RS00645 (Despr_0133) - 143113..143319 (+) 207 WP_015722872.1 hypothetical protein -
  DESPR_RS00650 (Despr_0134) - 143475..144041 (+) 567 WP_015722873.1 hypothetical protein -
  DESPR_RS00655 (Despr_0135) radC 144197..144676 (+) 480 WP_015722874.1 DNA repair protein RadC -
  DESPR_RS00660 (Despr_0136) - 144735..145655 (+) 921 WP_015722875.1 zincin-like metallopeptidase domain-containing protein -
  DESPR_RS00665 (Despr_0138) - 146499..147647 (-) 1149 WP_015722877.1 Shedu immune nuclease family protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14532.45 Da        Isoelectric Point: 5.9181

>NTDB_id=39696 DESPR_RS00640 WP_015722871.1 142624..143016(+) (ssb) [Desulfobulbus propionicus DSM 2032]
MLNKTMLIGNLGADVDIRYTKNQVAVATFRVATTERWRDAQGNPQEATEWHRIVAFAKLAEICGAYLAKGARVYIEGRLQ
TRKWQDTDGGNRFTTEIIAREMKMLGGGDRNAPPAPPEEQEPPVSDEVPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=39696 DESPR_RS00640 WP_015722871.1 142624..143016(+) (ssb) [Desulfobulbus propionicus DSM 2032]
ATGTTGAACAAGACCATGCTGATCGGCAACCTCGGCGCGGACGTGGACATCCGCTACACCAAGAACCAGGTGGCCGTGGC
CACCTTCCGGGTAGCCACCACCGAACGGTGGCGGGATGCCCAGGGCAACCCCCAGGAAGCCACCGAGTGGCACCGCATCG
TGGCCTTTGCCAAGCTCGCCGAGATCTGCGGCGCCTACTTGGCCAAGGGCGCGCGGGTGTACATCGAAGGCCGCCTGCAG
ACCCGCAAGTGGCAGGACACGGACGGTGGCAACCGCTTCACCACGGAGATCATCGCCCGCGAGATGAAGATGCTCGGCGG
CGGTGACCGCAACGCCCCGCCGGCACCGCCGGAGGAGCAGGAACCGCCCGTGAGTGACGAGGTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3YJ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.371

100

0.515
  ssb Neisseria meningitidis MC58

54.237

90.769

0.492
  ssb Neisseria gonorrhoeae MS11

53.39

90.769

0.485
  ssb Glaesserella parasuis strain SC1401

52.212

86.923

0.454

Multiple sequence alignment