Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GH769_RS21725 Genome accession   NZ_CP045767
Coordinates   4772275..4772790 (-) Length   171 a.a.
NCBI ID   WP_020302451.1    Uniprot ID   -
Organism   Pseudomonas sp. CFSAN084952     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4767275..4777790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH769_RS21700 (GH769_21700) - 4767650..4768405 (-) 756 WP_019818878.1 S9 family peptidase -
  GH769_RS21705 (GH769_21705) - 4768395..4769504 (-) 1110 WP_032904134.1 DUF3182 family protein -
  GH769_RS21710 (GH769_21710) - 4769674..4770645 (-) 972 WP_032904133.1 GlxA family transcriptional regulator -
  GH769_RS21715 (GH769_21715) - 4770742..4771305 (+) 564 WP_014720147.1 cysteine hydrolase family protein -
  GH769_RS21720 (GH769_21720) tam 4771327..4772088 (-) 762 WP_032904132.1 trans-aconitate 2-methyltransferase -
  GH769_RS21725 (GH769_21725) ssb 4772275..4772790 (-) 516 WP_020302451.1 single-stranded DNA-binding protein Machinery gene
  GH769_RS21730 (GH769_21730) - 4772800..4774194 (-) 1395 WP_032904131.1 MFS transporter -
  GH769_RS21735 (GH769_21735) uvrA 4774373..4777207 (+) 2835 WP_014720150.1 excinuclease ABC subunit UvrA -
  GH769_RS21740 (GH769_21740) bfr 4777275..4777739 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19046.20 Da        Isoelectric Point: 5.9455

>NTDB_id=396951 GH769_RS21725 WP_020302451.1 4772275..4772790(-) (ssb) [Pseudomonas sp. CFSAN084952]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAQ
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=396951 GH769_RS21725 WP_020302451.1 4772275..4772790(-) (ssb) [Pseudomonas sp. CFSAN084952]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGTGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCACCACAGCAGGCTGCTCCGCAACCGGCTCAG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment